Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3o02
(688 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 23 2.1
L10430-1|AAA27731.1| 150|Apis mellifera transposase protein. 23 3.6
L10433-1|AAA27732.1| 149|Apis mellifera transposase protein. 22 6.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.3
AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase pr... 22 6.3
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 23.4 bits (48), Expect = 2.1
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = -1
Query: 397 VWNPRSEHVPGHQTQGLPVHREALRETAA 311
V N H+PGH G P + A T +
Sbjct: 206 VQNGYGRHLPGHAQMGRPSYTTATMATTS 234
>L10430-1|AAA27731.1| 150|Apis mellifera transposase protein.
Length = 150
Score = 22.6 bits (46), Expect = 3.6
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +1
Query: 424 PKETGQSSGATGLHREDV 477
P+E+ Q++ G+HR+ V
Sbjct: 50 PRESAQTTSKAGIHRKKV 67
>L10433-1|AAA27732.1| 149|Apis mellifera transposase protein.
Length = 149
Score = 21.8 bits (44), Expect = 6.3
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 424 PKETGQSSGATGLHREDV 477
P+E Q++ G+HR+ V
Sbjct: 49 PREPAQTTSKAGIHRKKV 66
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 6/22 (27%), Positives = 15/22 (68%)
Frame = +3
Query: 54 NCDLKFSGFSFKGSVLTAICST 119
+CD+KF +++ G+ + + S+
Sbjct: 124 HCDMKFGSWTYDGNQVDLVLSS 145
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 6/22 (27%), Positives = 15/22 (68%)
Frame = +3
Query: 54 NCDLKFSGFSFKGSVLTAICST 119
+CD+KF +++ G+ + + S+
Sbjct: 124 HCDMKFGSWTYDGNQVDLVLSS 145
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 6/22 (27%), Positives = 15/22 (68%)
Frame = +3
Query: 54 NCDLKFSGFSFKGSVLTAICST 119
+CD+KF +++ G+ + + S+
Sbjct: 124 HCDMKFGSWTYDGNQVDLVLSS 145
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 6/22 (27%), Positives = 15/22 (68%)
Frame = +3
Query: 54 NCDLKFSGFSFKGSVLTAICST 119
+CD+KF +++ G+ + + S+
Sbjct: 124 HCDMKFGSWTYDGNQVDLVLSS 145
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 6/22 (27%), Positives = 15/22 (68%)
Frame = +3
Query: 54 NCDLKFSGFSFKGSVLTAICST 119
+CD+KF +++ G+ + + S+
Sbjct: 124 HCDMKFGSWTYDGNQVDLVLSS 145
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 6/22 (27%), Positives = 15/22 (68%)
Frame = +3
Query: 54 NCDLKFSGFSFKGSVLTAICST 119
+CD+KF +++ G+ + + S+
Sbjct: 124 HCDMKFGSWTYDGNQVDLVLSS 145
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.3
Identities = 6/22 (27%), Positives = 15/22 (68%)
Frame = +3
Query: 54 NCDLKFSGFSFKGSVLTAICST 119
+CD+KF +++ G+ + + S+
Sbjct: 192 HCDMKFGSWTYDGNQVDLVLSS 213
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.3
Identities = 6/22 (27%), Positives = 15/22 (68%)
Frame = +3
Query: 54 NCDLKFSGFSFKGSVLTAICST 119
+CD+KF +++ G+ + + S+
Sbjct: 192 HCDMKFGSWTYDGNQVDLVLSS 213
>AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase
protein.
Length = 342
Score = 21.8 bits (44), Expect = 6.3
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 424 PKETGQSSGATGLHREDV 477
P+E Q++ G+HR+ V
Sbjct: 171 PREPAQTTSKAGIHRKKV 188
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,568
Number of Sequences: 438
Number of extensions: 4127
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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