Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3n24
         (241 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P11138 Cluster: Trans-activating transcriptional regula...    80   8e-15
UniRef50_A6SNI7 Cluster: Putative uncharacterized protein; n=1; ...    31   4.9  
UniRef50_A0RQW3 Cluster: Putative uncharacterized protein; n=1; ...    31   6.5  

>UniRef50_P11138 Cluster: Trans-activating transcriptional
           regulatory protein; n=11; Nucleopolyhedrovirus|Rep:
           Trans-activating transcriptional regulatory protein -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 582

 Score = 80.2 bits (189), Expect = 8e-15
 Identities = 39/57 (68%), Positives = 39/57 (68%)
 Frame = +2

Query: 2   KHHMFVISKVNRRESTTXXXXXXXXXXXXXXXXVPLSDAITFAEQKLNCKYKKIEFN 172
           KHHMFVI KVNRRESTT                VPLSDAITFAEQKLNCKYKK EFN
Sbjct: 526 KHHMFVIGKVNRRESTTLHNNLLKLLALILQGLVPLSDAITFAEQKLNCKYKKFEFN 582


>UniRef50_A6SNI7 Cluster: Putative uncharacterized protein; n=1;
           Botryotinia fuckeliana B05.10|Rep: Putative
           uncharacterized protein - Botryotinia fuckeliana B05.10
          Length = 325

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 159 FLYLQFSFCSANVIASDNGTRPCNIKANNFNKLL 58
           FL+L F+F +A      NGT+P    A + +KLL
Sbjct: 22  FLFLFFAFAAAQTANQPNGTKPLTPNATDTSKLL 55


>UniRef50_A0RQW3 Cluster: Putative uncharacterized protein; n=1;
           Campylobacter fetus subsp. fetus 82-40|Rep: Putative
           uncharacterized protein - Campylobacter fetus subsp.
           fetus (strain 82-40)
          Length = 116

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -2

Query: 180 YN*LNSIFLYLQFSFCSANVIASDNGTRPCNIKANNFN 67
           Y+  NS+  Y   S   A V++ + G++ C+I+++ FN
Sbjct: 13  YSSSNSLIKYQNISISKAMVLSKEKGSKICDIQSSKFN 50


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,533,300
Number of Sequences: 1657284
Number of extensions: 1959258
Number of successful extensions: 3756
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3737
length of database: 575,637,011
effective HSP length: 58
effective length of database: 479,514,539
effective search space used: 10069805319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)