Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3n20
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...   111   8e-26
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...   109   3e-25
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    42   6e-05
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    32   0.081
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    29   0.57 
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   7.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   7.1  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   7.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.1  

>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score =  111 bits (267), Expect = 8e-26
 Identities = 60/115 (52%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
 Frame = +3

Query: 33  MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPE 212
           MS  GK I C AAVAW A +PLSIE+I+V PPKA EVRVK+  + VCHTDAYTLSG DPE
Sbjct: 1   MSFEGKTITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDPE 60

Query: 213 GVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLSHLEGN--SFWRLQK*RKCTK 371
           G FP+VL                +V+PGDHV+ L   E     F R  K   C+K
Sbjct: 61  GAFPIVLGHEGAGIVESIGEGVINVRPGDHVILLYTPECKECKFCRSGKTNLCSK 115



 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 32/59 (54%), Positives = 41/59 (69%)
 Frame = +1

Query: 328 GTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVVDM 504
           G+AFGG K R  +P  VDEY++    +DE++T+  PLK IN+AF  MH GK IR VVDM
Sbjct: 317 GSAFGGVKGRSELPNFVDEYMQGHFKVDEYITNEEPLKNINKAFDHMHEGKCIRCVVDM 375


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score =  109 bits (262), Expect = 3e-25
 Identities = 50/92 (54%), Positives = 62/92 (67%)
 Frame = +3

Query: 39  TVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGV 218
           T GK+I C AAVAW+   PLSIE ++V PP+  EVR+KI  +GVCHTDAYTLSGKDPEG+
Sbjct: 6   TAGKIINCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGL 65

Query: 219 FPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPL 314
           FPV+L               T+V+ GD V+ L
Sbjct: 66  FPVILGHEGAGIVESVGPQVTTVQVGDPVIAL 97



 Score = 79.0 bits (186), Expect = 5e-16
 Identities = 34/63 (53%), Positives = 44/63 (69%)
 Frame = +1

Query: 316 RTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAV 495
           R W+G AFGG K R  +P LV EYL+ KL +D+++TH  PLKEINEAF  MH G  I+ V
Sbjct: 317 RVWRGCAFGGVKGRSQLPDLVKEYLDHKLEIDKYITHRRPLKEINEAFTDMHNGNCIKTV 376

Query: 496 VDM 504
           + +
Sbjct: 377 LSI 379


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 31/86 (36%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = +3

Query: 57  KCLAAVAWEAGKPLSI--EEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDP-EGVFPV 227
           K LAAV    G P ++  EE+ V  P   EV V I  TGVCHTD + L G  P     P+
Sbjct: 6   KQLAAVFHTHGGPENVKFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQGDWPLPAKMPL 65

Query: 228 VLXXXXXXXXXXXXXXXTSVKPGDHV 305
           +                T +K GD V
Sbjct: 66  IGGHEGAGVVVKVGAGVTRLKIGDRV 91


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 31.9 bits (69), Expect = 0.081
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 96  LSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVL 233
           + I+ + +  PK GE+ VKI A  +  +D    +G  P  V+P ++
Sbjct: 23  IEIQSVPIPQPKNGELLVKIEAAAINPSDLMNATGGFPYTVYPRIV 68


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = -3

Query: 627 LFFYCVNKMH--VVYLNYT-CSKC*RKKV*QVYKNSINIFP*KLHVNYCTDRF 478
           LFFY +  ++  V+Y N+T  S+C +K   Q+Y+   + FP  ++   C + F
Sbjct: 314 LFFYEMGSLYIPVIYSNHTRTSRCSQKDA-QIYREWYSFFPRYVYSTNCMNDF 365


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 57  KCLAAVAWEAGKPL-SIEEIEVDPPKAGEVRVKITATG 167
           K ++ +AWE  KPL + E+I  D   +GE+ V  T +G
Sbjct: 63  KVISCIAWEQ-KPLYASEQITTDISGSGEILVLGTNSG 99


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 523  IYTIFVHLLNLFSSAFTTSIIKIHN 597
            IYT+F HLLN++      S  K  N
Sbjct: 1720 IYTLFEHLLNIYKETINDSDKKEKN 1744


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 439 KEINEAFHLMHAGKSIRAVVDM*FLRKNIY 528
           K +N  F L H  K+ +   DM ++RKN Y
Sbjct: 444 KLLNLTFELQHLRKTSKNDEDMSYVRKNSY 473


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 397  SSPSTHLQALVH-FLYFCNLQKLFPSRCD 314
            SSPS+ L+     F Y CN+ KL+  + D
Sbjct: 914  SSPSSDLEVKQQAFTYVCNISKLYVYKSD 942


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,179
Number of Sequences: 5004
Number of extensions: 53778
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)