Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3n20
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1209 + 34948899-34948938,34949086-34949222,34949854-349499... 117 9e-27
11_01_0688 - 5667539-5667655,5667792-5667953,5668084-5668179,566... 107 1e-23
11_01_0689 - 5678227-5678343,5678475-5678636,5678751-5678846,567... 104 5e-23
11_01_0686 - 5635207-5635323,5635483-5635644,5635727-5635822,563... 100 9e-22
03_01_0633 - 4649267-4649383,4649480-4649641,4649735-4649895,465... 73 3e-13
10_01_0344 - 3777610-3777758,3777870-3777959,3778950-3779025,377... 72 5e-13
03_01_0635 - 4660692-4660737,4660783-4660829,4661371-4661507,466... 69 3e-12
07_03_1306 - 25643469-25643609,25644008-25644169,25644496-256446... 67 1e-11
03_01_0636 - 4664472-4664588,4664695-4664856,4664984-4665061,466... 67 1e-11
02_05_0070 - 25584690-25584806,25585151-25585312,25585396-255854... 65 5e-11
08_01_0065 + 452383-452629,452733-452868,453049-453118,453237-45... 57 1e-08
10_01_0343 - 3773274-3773390,3773476-3773637,3773758-3773853,377... 49 4e-06
03_01_0012 - 101584-101898,102274-102531,102932-103474 41 0.001
10_08_0923 + 21597593-21597629,21598089-21598135,21598253-215983... 36 0.036
09_04_0028 - 13928542-13929538,13929736-13929818 34 0.11
04_04_1128 + 31103582-31103709,31105231-31105344,31105906-311064... 33 0.15
09_04_0029 - 13932414-13933416,13933821-13933903 33 0.19
09_04_0030 + 13940168-13940250,13940703-13941714 33 0.26
09_04_0031 + 13946692-13946774,13947007-13948012 32 0.45
10_08_0101 - 14789994-14790205,14790290-14790957,14791232-147913... 31 0.59
02_05_1140 + 34386042-34386302,34386738-34386917,34386999-343870... 31 1.0
08_01_1024 - 10349061-10349200,10349373-10350040,10350478-103505... 29 2.4
12_01_1019 - 10398880-10399314,10399401-10399481,10399560-103996... 29 3.2
03_02_0208 + 6420576-6420658,6421640-6421753,6421848-6422379,642... 28 5.5
09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,991... 28 7.3
08_02_0538 - 18321101-18321128,18321767-18322587 28 7.3
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510... 28 7.3
03_02_0747 + 10888358-10888481,10888529-10888609,10889011-108892... 28 7.3
08_02_1462 + 27308792-27308924,27309711-27309778,27309854-273101... 27 9.7
>02_05_1209 +
34948899-34948938,34949086-34949222,34949854-34949900,
34949990-34950315,34950640-34950722,34950801-34950876,
34951499-34951656,34951979-34952140,34952235-34952351
Length = 381
Score = 117 bits (281), Expect = 9e-27
Identities = 53/97 (54%), Positives = 66/97 (68%)
Frame = +3
Query: 36 STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEG 215
ST G+VI C AAVAWEA +P++IE+++V PP+AGEVRVKI T +CHTD YT SGKDPEG
Sbjct: 4 STQGQVITCKAAVAWEANRPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEG 63
Query: 216 VFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLSHLE 326
+FP +L T V+PGDHV+P E
Sbjct: 64 LFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAE 100
Score = 81.8 bits (193), Expect = 4e-16
Identities = 34/61 (55%), Positives = 48/61 (78%)
Frame = +1
Query: 316 RTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAV 495
R WKGTAFGG+KSR VP LV++YL K++ +DE+VTH++ L +IN+AF L+H G +R V
Sbjct: 317 RVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTDINKAFDLLHEGGCLRCV 376
Query: 496 V 498
+
Sbjct: 377 L 377
>11_01_0688 -
5667539-5667655,5667792-5667953,5668084-5668179,
5668278-5668339,5668434-5668509,5668612-5668694,
5668807-5669132,5669741-5669787,5669900-5670036,
5670135-5670168
Length = 379
Score = 107 bits (256), Expect = 1e-23
Identities = 52/94 (55%), Positives = 60/94 (63%)
Frame = +3
Query: 33 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPE 212
M+T GKVIKC AAVAWEAGKPLSIEE+EV PP+A EVRVKI T +CHTD Y K
Sbjct: 1 MATAGKVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYTALCHTDVYFWEAKGQT 60
Query: 213 GVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPL 314
VFP +L T + PGDHV+P+
Sbjct: 61 PVFPRILGHEAGGIVESVGEGVTELAPGDHVLPV 94
Score = 73.3 bits (172), Expect = 1e-13
Identities = 32/63 (50%), Positives = 46/63 (73%)
Frame = +1
Query: 316 RTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAV 495
+T KGT FG YK R +P +V+ Y++K+L L++F+TH+VP EIN AF LM G+S+R V
Sbjct: 315 KTLKGTFFGNYKPRTDLPNVVELYMKKELELEKFITHSVPFSEINTAFDLMLKGESLRCV 374
Query: 496 VDM 504
+ M
Sbjct: 375 MRM 377
>11_01_0689 -
5678227-5678343,5678475-5678636,5678751-5678846,
5679345-5679406,5679648-5679723,5679847-5679929,
5680525-5680853,5681402-5681448,5681707-5681843,
5682093-5682126
Length = 380
Score = 104 bits (250), Expect = 5e-23
Identities = 50/94 (53%), Positives = 59/94 (62%)
Frame = +3
Query: 33 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPE 212
M+T GKVIKC AAVAWEAGKPLSIEE+EV PP+A EVR+KI T +CHTD Y K
Sbjct: 1 MATAGKVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRLKILYTALCHTDVYFWEAKGQT 60
Query: 213 GVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPL 314
VFP + T + PGDHV+P+
Sbjct: 61 PVFPRIFGHEAGGIVESVGEGVTELSPGDHVLPV 94
Score = 73.7 bits (173), Expect = 1e-13
Identities = 31/63 (49%), Positives = 46/63 (73%)
Frame = +1
Query: 316 RTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAV 495
RT +GT FG YK R +P +V+ Y+ K+L L++F+TH+VP EIN AF LM +G+S+R +
Sbjct: 316 RTLRGTFFGNYKPRTDLPGVVEMYMNKELELEKFITHSVPFSEINTAFDLMLSGESLRCI 375
Query: 496 VDM 504
+ M
Sbjct: 376 IRM 378
>11_01_0686 -
5635207-5635323,5635483-5635644,5635727-5635822,
5635903-5635964,5636046-5636121,5636201-5636283,
5636369-5636694,5637524-5637570,5637668-5637804,
5638064-5638097
Length = 379
Score = 100 bits (240), Expect = 9e-22
Identities = 49/94 (52%), Positives = 57/94 (60%)
Frame = +3
Query: 33 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPE 212
M+T GKVIKC AAVAWEA KPL IEE+EV PP+A EVRVKI T +CHTD Y K
Sbjct: 1 MATAGKVIKCKAAVAWEAAKPLVIEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQT 60
Query: 213 GVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPL 314
VFP + T + PGDHV+P+
Sbjct: 61 PVFPRIFGHEAGGIVESVGEGVTDLAPGDHVLPV 94
Score = 77.4 bits (182), Expect = 9e-15
Identities = 32/63 (50%), Positives = 46/63 (73%)
Frame = +1
Query: 316 RTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAV 495
RT KGT FG YK R +P +V+ Y++K+L +++F+TH+VP EIN AF LMH G+ IR +
Sbjct: 315 RTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINTAFDLMHKGEGIRCI 374
Query: 496 VDM 504
+ M
Sbjct: 375 IRM 377
>03_01_0633 -
4649267-4649383,4649480-4649641,4649735-4649895,
4650056-4650080,4650155-4650237,4650332-4650704
Length = 306
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = +1
Query: 328 GTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVVDM 504
G+ FGG K ++ +P L D+YL K+L LD+F+TH VPLK+IN AF L+ GKS+R + M
Sbjct: 246 GSLFGGVKPKQDIPILADKYLNKELELDKFITHEVPLKDINTAFDLLLQGKSLRCTIWM 304
>10_01_0344 -
3777610-3777758,3777870-3777959,3778950-3779025,
3779206-3779288,3780456-3780799,3782064-3782113,
3782406-3782542,3782692-3782776
Length = 337
Score = 71.7 bits (168), Expect = 5e-13
Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = +3
Query: 21 SSAVMSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSG 200
+ A T GK IKC AAVA G+ L +EE+EV PP EVR+K+ T +CHTD G
Sbjct: 14 NGAGADTKGKPIKCKAAVAHGPGEALVMEEVEVAPPARMEVRLKVLFTSICHTDLSAWKG 73
Query: 201 KDP-EGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPL 314
++ + FP +L + PGDHVVP+
Sbjct: 74 ENELQRKFPRILGHEAAGVVESVGEGVEDLAPGDHVVPI 112
>03_01_0635 -
4660692-4660737,4660783-4660829,4661371-4661507,
4661661-4661697
Length = 88
Score = 68.9 bits (161), Expect = 3e-12
Identities = 32/57 (56%), Positives = 40/57 (70%)
Frame = +3
Query: 54 IKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFP 224
I+C AAV AG+PL++EEI VDPPKA EVR+KI T +CH+D +D GVFP
Sbjct: 9 IRCKAAVCRAAGEPLAVEEIVVDPPKAHEVRIKIVCTSLCHSDVTFWRMQDFPGVFP 65
>07_03_1306 -
25643469-25643609,25644008-25644169,25644496-25644659,
25645117-25645192,25645569-25645651,25646393-25646669
Length = 300
Score = 67.3 bits (157), Expect = 1e-11
Identities = 28/59 (47%), Positives = 41/59 (69%)
Frame = +1
Query: 328 GTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVVDM 504
G+ FGG K + +P L +YL+K+L L+EF+TH + +EIN AF L+ GKSIR ++ M
Sbjct: 232 GSLFGGIKPKNDIPMLAQKYLDKELELEEFITHEMGFEEINRAFELLTQGKSIRCIIWM 290
>03_01_0636 -
4664472-4664588,4664695-4664856,4664984-4665061,
4665157-4665221,4665476-4665558,4666052-4666414,
4666512-4666555,4666632-4666765,4666881-4666917
Length = 360
Score = 66.9 bits (156), Expect = 1e-11
Identities = 37/88 (42%), Positives = 45/88 (51%)
Frame = +3
Query: 48 KVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPV 227
K I+C AAV A +PL +EEI VDPPKA E+R+KI T +CHTD DP FP
Sbjct: 7 KPIRCKAAVCRAASEPLIVEEIVVDPPKAYEIRIKIICTSLCHTDVTLWHKVDP--AFPR 64
Query: 228 VLXXXXXXXXXXXXXXXTSVKPGDHVVP 311
+L + GD VVP
Sbjct: 65 ILGHEAYGVVESVGENVEGLAAGDTVVP 92
Score = 57.6 bits (133), Expect = 8e-09
Identities = 26/59 (44%), Positives = 39/59 (66%)
Frame = +1
Query: 328 GTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAVVDM 504
G+ FGG K + +P L ++ + K+L L++ VTH V L EIN AF L+ GKS+R ++ M
Sbjct: 300 GSLFGGAKPKTDIPILAEKCMNKELELEKLVTHEVGLTEINTAFDLLLQGKSLRCIIWM 358
>02_05_0070 -
25584690-25584806,25585151-25585312,25585396-25585491,
25585894-25585955,25586035-25586110,25586195-25586277,
25586456-25586778,25586882-25586928,25587014-25587150,
25587250-25587322,25588159-25588251,25588543-25588632,
25588684-25588786,25588869-25588981,25589181-25589778,
25589888-25590065,25590277-25590296,25590713-25590882,
25591245-25591485,25592997-25593199
Length = 994
Score = 64.9 bits (151), Expect = 5e-11
Identities = 32/94 (34%), Positives = 46/94 (48%)
Frame = +3
Query: 27 AVMSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKD 206
A S+ I C AAVAW G+ L +EE+EV PP+A E+RVK+ +T +C +D
Sbjct: 615 AAASSPAAAITCRAAVAWAPGQALVMEEVEVAPPEAMEIRVKVVSTSICRSDVTQWQSTA 674
Query: 207 PEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVV 308
+FP + T + GDHV+
Sbjct: 675 QTDLFPRIFGHEASGVVESVGEGVTEFEVGDHVL 708
Score = 61.3 bits (142), Expect = 6e-10
Identities = 26/63 (41%), Positives = 41/63 (65%)
Frame = +1
Query: 316 RTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAV 495
RT KG+ FGG++ + +P LVD+Y K++ +D+ VTH++ IN+A LM K +R V
Sbjct: 930 RTLKGSLFGGWRPKSDLPLLVDKYANKEIQVDDLVTHDLSFDYINKALELMLENKCLRCV 989
Query: 496 VDM 504
+ M
Sbjct: 990 IHM 992
>08_01_0065 +
452383-452629,452733-452868,453049-453118,453237-453330,
453426-453639,453756-453897,454076-454246,454586-454780
Length = 422
Score = 57.2 bits (132), Expect = 1e-08
Identities = 23/47 (48%), Positives = 33/47 (70%)
Frame = +3
Query: 69 AVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDP 209
AV WE G+PL++E+ + PKAGE+ +K A GVCH+D + L G+ P
Sbjct: 53 AVFWEPGRPLTLEDFRMPRPKAGELLIKTKACGVCHSDLHVLKGELP 99
>10_01_0343 -
3773274-3773390,3773476-3773637,3773758-3773853,
3773956-3774009
Length = 142
Score = 48.8 bits (111), Expect = 4e-06
Identities = 19/59 (32%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Frame = +1
Query: 328 GTAFGGYKSRESVPKLVDEYLEKKLPL--DEFVTHNVPLKEINEAFHLMHAGKSIRAVV 498
G FG +K + +P++V++ ++ ++ + D F+T +P +IN+AF L+ GKS+R ++
Sbjct: 82 GCVFGDFKGKSQLPEIVEKCMQGEININFDGFITQELPFADINKAFQLLEEGKSLRCLL 140
>03_01_0012 - 101584-101898,102274-102531,102932-103474
Length = 371
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = +3
Query: 51 VIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSG 200
V+KC+ + L E++EV PK GE+R+K TA GV D Y G
Sbjct: 46 VVKCIRVHELGGPEVLRWEQVEVGEPKEGEIRIKNTAIGVNFIDVYYRQG 95
>10_08_0923 +
21597593-21597629,21598089-21598135,21598253-21598391,
21598449-21598562,21599206-21599432,21599578-21599835,
21600014-21600304,21600766-21600830,21601116-21601299,
21601857-21601964
Length = 489
Score = 35.5 bits (78), Expect = 0.036
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 96 LSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPE 212
L+ EE+E+ P GE+R+K A GV + D Y +G E
Sbjct: 30 LTWEEVEIGEPSEGEIRIKNKAIGVNYVDIYYRTGLHQE 68
>09_04_0028 - 13928542-13929538,13929736-13929818
Length = 359
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 138 EVRVKITATGVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHV 305
+V +K+ G+CHTD +T+ + ++PVV T K GD V
Sbjct: 34 DVTIKVLYCGICHTDLHTIKNEWGNAMYPVVPGHEIVGVVAGVGAGVTRFKAGDTV 89
>04_04_1128 +
31103582-31103709,31105231-31105344,31105906-31106446,
31106911-31107003,31107041-31107194,31107296-31107498
Length = 410
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = +3
Query: 111 IEVDPPKAGE--VRVKITATGVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTS 284
I + K G+ V +K+ G+CH+D +T+ + V+PVV
Sbjct: 38 IRISRRKTGDDDVAIKVLYCGICHSDLHTIKNEWRNAVYPVVAGHEITGVVTEVGKNVAR 97
Query: 285 VKPGDHV 305
K GD V
Sbjct: 98 FKAGDEV 104
>09_04_0029 - 13932414-13933416,13933821-13933903
Length = 361
Score = 33.1 bits (72), Expect = 0.19
Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Frame = +3
Query: 66 AAVAWEAGKP---LSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVLX 236
AAV W A LS K +V +K+ G+CHTD + + ++PVV
Sbjct: 7 AAVGWAARDDSGVLSPYNFSRRAQKDDDVTIKVLYCGICHTDLHVVKNDWGNAMYPVVPG 66
Query: 237 XXXXXXXXXXXXXXTSVKPGDHV 305
T K GD V
Sbjct: 67 HEIVGVVTGVGAGVTKFKAGDTV 89
>09_04_0030 + 13940168-13940250,13940703-13941714
Length = 364
Score = 32.7 bits (71), Expect = 0.26
Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Frame = +3
Query: 66 AAVAWEAGKP---LSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVLX 236
AAV W A LS K +V +K+ G+CHTD + + ++PVV
Sbjct: 7 AAVGWAARDDSGVLSPYNFSRRAQKDDDVTIKVLYCGICHTDLHIVKNDWGNAMYPVVPG 66
Query: 237 XXXXXXXXXXXXXXTSVKPGDHV 305
T K GD V
Sbjct: 67 HEIVGVVTGVGAGVTKFKAGDTV 89
>09_04_0031 + 13946692-13946774,13947007-13948012
Length = 362
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +3
Query: 138 EVRVKITATGVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHV 305
+V +K+ G+CHTD + + + ++PVV T K GD V
Sbjct: 34 DVTIKVLYCGICHTDLHIIKNEWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTV 89
>10_08_0101 -
14789994-14790205,14790290-14790957,14791232-14791345,
14794826-14794932
Length = 366
Score = 31.5 bits (68), Expect = 0.59
Identities = 20/94 (21%), Positives = 37/94 (39%)
Frame = +3
Query: 24 SAVMSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGK 203
+A + G+ + + A ++ LS I +V +KI G+CH+D + + +
Sbjct: 4 TAASAAAGEEQQAVGLAARDSSGHLSPFAISRRSTGDDDVAIKILFCGICHSDLHCIKNE 63
Query: 204 DPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHV 305
++P+V T K GD V
Sbjct: 64 WKHSIYPLVPGHEIAGVVTEVGKNVTRFKAGDRV 97
>02_05_1140 +
34386042-34386302,34386738-34386917,34386999-34387080,
34387180-34387287,34387442-34387630,34387814-34388010
Length = 338
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 66 AAVAWEAGKPLSIEEIEVD----PPKAGEVRVKITATGVCHTDAYTLSGKDP 209
A V AG P +EE +V PP GEV V ++A GV D G+ P
Sbjct: 3 AVVIARAGGPEVLEERDVGEGLPPPGEGEVLVGVSAAGVNRADTVQRQGRYP 54
>08_01_1024 -
10349061-10349200,10349373-10350040,10350478-10350591,
10351956-10352032
Length = 332
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +3
Query: 138 EVRVKITATGVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHV 305
+V +KI G+CH+D +++ + +P+V T K GD V
Sbjct: 32 DVVIKILYCGICHSDLHSIKNEWKNATYPLVPGHEIAGVVTEAGKNVTKFKGGDKV 87
>12_01_1019 -
10398880-10399314,10399401-10399481,10399560-10399652,
10399784-10399999,10403837-10403935,10404244-10404867,
10404946-10405033,10405167-10405430,10406437-10406504
Length = 655
Score = 29.1 bits (62), Expect = 3.2
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
Frame = +1
Query: 64 WPQSRGKQASRCP-SRRLKWTRQKPVKCALR-SRPPESAILTRIHSP--EKILRECFL*Y 231
WP R Q S CP ++ + + K +K L S P L + S + C+ Y
Sbjct: 358 WPP-RNSQPSNCPQTQHVSTSNSKKMKFNLDLSEPHVKGCLELLFSSSYKTFHHRCYTHY 416
Query: 232 WDMKAAESWRVSVRESLQSSPGTT*YLCRTWKGTAFGGYKSRESVPKLVDEYLEKK 399
+S R S E L+ PG +LC ++ F ++ Y+ KK
Sbjct: 417 LKSGGGDSTRNSPYEPLRDRPGDWTWLCDHFETEEFHKKSVIGKANRMKLSYVHKK 472
>03_02_0208 +
6420576-6420658,6421640-6421753,6421848-6422379,
6422452-6422605,6422655-6422947
Length = 391
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 138 EVRVKITATGVCHTDAYTLSGKDPEGVFPVV 230
+V VKI G+CH+D T+ + +PVV
Sbjct: 34 DVVVKILFCGICHSDLSTIKNEWGNAKYPVV 64
>09_02_0499 -
9917891-9918148,9918240-9918494,9918769-9918940,
9919056-9919283,9919628-9919761,9919842-9919925,
9920007-9920297,9920569-9920901,9921029-9921171,
9921266-9921379,9921470-9921626,9921709-9921812,
9921914-9922074,9922158-9922474,9922574-9922855,
9923205-9923506,9923603-9923693,9923864-9923917,
9924052-9924128,9924213-9924372,9924473-9924557,
9924635-9924723,9925791-9925925
Length = 1341
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 430 VPLKEINEAFHLMHAGKSIRA 492
VP+KE EAF H G++IR+
Sbjct: 352 VPVKEFAEAFQSFHVGQAIRS 372
>08_02_0538 - 18321101-18321128,18321767-18322587
Length = 282
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 208 GSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSMDS 95
G F + SV Q P+ ILT+ +P+ + S SS+D+
Sbjct: 222 GQFDYAALVSVSQRPIRDILTKIAPSVIPTDSSSSLDT 259
>07_03_1757 +
29250163-29250349,29250612-29250813,29250898-29251008,
29251112-29251160,29251247-29251353,29251439-29251942,
29252486-29252614,29252865-29253161,29253274-29253720,
29253828-29253893,29254109-29254169,29254314-29254463,
29254555-29254689,29254791-29254818,29255430-29255479
Length = 840
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 6 CDWQLSSAVMSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTD- 182
CD L+ + T G V K ++W P ++ +E G+ V+++ + + +
Sbjct: 353 CDLPLAEDIPITSGSVRKGKRLISWRPDMPSTLYWVEAQ--DGGDANVEVSPRDIVYMEL 410
Query: 183 AYTLSGKDPE 212
A L+G+ P+
Sbjct: 411 ADPLNGEKPQ 420
>03_02_0747 +
10888358-10888481,10888529-10888609,10889011-10889227,
10889350-10889460,10889615-10889660,10889744-10889853,
10889926-10890429,10891466-10891594,10891934-10892230,
10892322-10892680,10892968-10893016,10893124-10893184,
10893429-10893578,10893659-10893796,10894525-10894805,
10895005-10895050
Length = 900
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 6 CDWQLSSAVMSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTD- 182
CD L+ + V K ++ W KP + +E G+ +V+++ + + +
Sbjct: 364 CDLPLAEDIPIATSSVRKGKRSIYWRPDKPAMLYWVETQ--DGGDAKVEVSPRDIVYMEN 421
Query: 183 AYTLSGKDPE 212
A ++G+ PE
Sbjct: 422 AEPINGEQPE 431
>08_02_1462 +
27308792-27308924,27309711-27309778,27309854-27310159,
27310168-27310839
Length = 392
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 75 AWEAGK-PLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTL 194
AW K L I ++ P +VRV++ A G+C +D + L
Sbjct: 26 AWLVAKNTLKIMPFKLPPVGPYDVRVRMKAVGICGSDVHYL 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,501,088
Number of Sequences: 37544
Number of extensions: 367234
Number of successful extensions: 1026
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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