Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3n20
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U18781-1|AAB03374.1|  384|Caenorhabditis elegans alcohol dehydro...   117   8e-27
AC006663-4|AAF39899.1|  384|Caenorhabditis elegans Hypothetical ...   117   8e-27
AC006663-3|AAL32231.1|  386|Caenorhabditis elegans Hypothetical ...   111   3e-25
AC025722-1|AAK68507.1|  554|Caenorhabditis elegans Hypothetical ...    83   2e-16
Z81570-3|CAB04603.1|  351|Caenorhabditis elegans Hypothetical pr...    40   0.001
AF125951-1|AAD14690.3|  326|Caenorhabditis elegans Hypothetical ...    38   0.005
Z81570-2|CAB04604.1|  349|Caenorhabditis elegans Hypothetical pr...    35   0.057
Z78419-6|CAB01704.1|  487|Caenorhabditis elegans Hypothetical pr...    31   0.53 
Z66515-1|CAA91347.1|  218|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z83119-4|CAE17866.1|  226|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z70782-4|CAA94842.1|  347|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z92834-3|CAB07384.1|  328|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z82081-5|CAB04958.1|  344|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z70782-3|CAA94841.1|  347|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z66561-3|CAA91455.1|  422|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    27   8.6  

>U18781-1|AAB03374.1|  384|Caenorhabditis elegans alcohol
           dehydrogenase protein.
          Length = 384

 Score =  117 bits (281), Expect = 8e-27
 Identities = 58/93 (62%), Positives = 61/93 (65%)
 Frame = +3

Query: 36  STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEG 215
           ST G+VI C AAVAW A  PLSIE I+V PPKA EVRVKI  T VCHTDAYTL G DPEG
Sbjct: 3   STAGQVINCKAAVAWSAKAPLSIETIQVAPPKAHEVRVKILYTAVCHTDAYTLDGHDPEG 62

Query: 216 VFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPL 314
           +FPVVL               T   PGDHVVPL
Sbjct: 63  LFPVVLGHEGSGIVESVGEGVTGFAPGDHVVPL 95



 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 37/61 (60%), Positives = 51/61 (83%)
 Frame = +1

Query: 316 RTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAV 495
           RTWKGTAFGG+KS ESVP+LVD+Y+ KKL +DEF+TH   + +IN AF ++H G+S+R+V
Sbjct: 319 RTWKGTAFGGWKSVESVPRLVDDYMNKKLLIDEFITHRWNIDDINTAFDVLHKGESLRSV 378

Query: 496 V 498
           +
Sbjct: 379 L 379


>AC006663-4|AAF39899.1|  384|Caenorhabditis elegans Hypothetical
           protein H24K24.3a protein.
          Length = 384

 Score =  117 bits (281), Expect = 8e-27
 Identities = 58/93 (62%), Positives = 61/93 (65%)
 Frame = +3

Query: 36  STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEG 215
           ST G+VI C AAVAW A  PLSIE I+V PPKA EVRVKI  T VCHTDAYTL G DPEG
Sbjct: 3   STAGQVINCKAAVAWSAKAPLSIETIQVAPPKAHEVRVKILYTAVCHTDAYTLDGHDPEG 62

Query: 216 VFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPL 314
           +FPVVL               T   PGDHVVPL
Sbjct: 63  LFPVVLGHEGSGIVESVGEGVTGFAPGDHVVPL 95



 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 37/61 (60%), Positives = 51/61 (83%)
 Frame = +1

Query: 316 RTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAV 495
           RTWKGTAFGG+KS ESVP+LVD+Y+ KKL +DEF+TH   + +IN AF ++H G+S+R+V
Sbjct: 319 RTWKGTAFGGWKSVESVPRLVDDYMNKKLLIDEFITHRWNIDDINTAFDVLHKGESLRSV 378

Query: 496 V 498
           +
Sbjct: 379 L 379


>AC006663-3|AAL32231.1|  386|Caenorhabditis elegans Hypothetical
           protein H24K24.3b protein.
          Length = 386

 Score =  111 bits (268), Expect = 3e-25
 Identities = 58/95 (61%), Positives = 61/95 (64%), Gaps = 2/95 (2%)
 Frame = +3

Query: 36  STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVK--ITATGVCHTDAYTLSGKDP 209
           ST G+VI C AAVAW A  PLSIE I+V PPKA EVRVK  I  T VCHTDAYTL G DP
Sbjct: 3   STAGQVINCKAAVAWSAKAPLSIETIQVAPPKAHEVRVKFQILYTAVCHTDAYTLDGHDP 62

Query: 210 EGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPL 314
           EG+FPVVL               T   PGDHVVPL
Sbjct: 63  EGLFPVVLGHEGSGIVESVGEGVTGFAPGDHVVPL 97



 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 37/61 (60%), Positives = 51/61 (83%)
 Frame = +1

Query: 316 RTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRAV 495
           RTWKGTAFGG+KS ESVP+LVD+Y+ KKL +DEF+TH   + +IN AF ++H G+S+R+V
Sbjct: 321 RTWKGTAFGGWKSVESVPRLVDDYMNKKLLIDEFITHRWNIDDINTAFDVLHKGESLRSV 380

Query: 496 V 498
           +
Sbjct: 381 L 381


>AC025722-1|AAK68507.1|  554|Caenorhabditis elegans Hypothetical
           protein Y50D4C.2 protein.
          Length = 554

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 34/59 (57%), Positives = 47/59 (79%)
 Frame = +1

Query: 316 RTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGKSIRA 492
           RTWKGTAFGG+KS ESVP+LVD+Y+ KKL +DEF+TH   + +IN AF ++  G+ +R+
Sbjct: 492 RTWKGTAFGGWKSVESVPRLVDDYMNKKLLIDEFITHRCNIDDINAAFDVLRKGEGLRS 550



 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 30/54 (55%), Positives = 31/54 (57%)
 Frame = +3

Query: 153 ITATGVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPL 314
           I  T VCHTDAYTL G DPEG+FPVVL               T   PGDHVVPL
Sbjct: 215 ILYTSVCHTDAYTLDGHDPEGLFPVVLGHEGSGIVESVGKGVTGFAPGDHVVPL 268



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 55  LSAWPQSRGKQASRCPSRRLKWTRQKPVKCALR 153
           + A P S G Q      +R KW  +KP K AL+
Sbjct: 181 IPARPPSPGAQKLHSRLKRSKWLHRKPTKFALK 213


>Z81570-3|CAB04603.1|  351|Caenorhabditis elegans Hypothetical
           protein K12G11.4 protein.
          Length = 351

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +3

Query: 87  GKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSG 200
           G PL + ++ V  P+  E+ VKI  +G+CH+D +T  G
Sbjct: 19  GGPLEVRQVSVPQPQENELLVKIEYSGICHSDLHTWEG 56


>AF125951-1|AAD14690.3|  326|Caenorhabditis elegans Hypothetical
           protein D2063.1 protein.
          Length = 326

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +3

Query: 51  VIKCLAAVAWEA-GKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSG 200
           V K   A+ +E+ G PL I+++ +  P   E+ VK+  +G+CH+D +T  G
Sbjct: 6   VPKTQRALIFESYGGPLEIKQLPIPQPNEDELLVKMEYSGICHSDVHTWLG 56


>Z81570-2|CAB04604.1|  349|Caenorhabditis elegans Hypothetical
           protein K12G11.3 protein.
          Length = 349

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 93  PLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSG 200
           PL + ++ V  P   E+ VKI  +G+CH+D +   G
Sbjct: 20  PLEVRQVPVPSPADDEILVKIEYSGICHSDLHVWLG 55


>Z78419-6|CAB01704.1|  487|Caenorhabditis elegans Hypothetical
           protein F26A3.6 protein.
          Length = 487

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 63  LAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAY 188
           L A+ + +  PL  E I  DP    +  +++T T VC  DAY
Sbjct: 284 LVAMRYCSCHPLMAELIHYDPSSYRDFLLRVTQTSVCSVDAY 325


>Z66515-1|CAA91347.1|  218|Caenorhabditis elegans Hypothetical
           protein R53.2 protein.
          Length = 218

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 361 SVPKLVDEYLEKKLPLDEFVTH 426
           S+ KL+D+YL K++ +DE   H
Sbjct: 59  SIGKLIDQYLRKEIDMDEHALH 80


>Z83119-4|CAE17866.1|  226|Caenorhabditis elegans Hypothetical
           protein R05H10.7 protein.
          Length = 226

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +3

Query: 21  SSAVMSTVGKVIKCLAAVAWEA-GKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLS 197
           S+ V +  G+++ CL   AW+     +   + EVD      +   I     CH D + L+
Sbjct: 60  STVVTTQSGEIVACLVNSAWKRDDNAVEGADYEVDEGLTENMTAFIKMLNTCHEDFWNLA 119


>Z70782-4|CAA94842.1|  347|Caenorhabditis elegans Hypothetical
           protein R04B5.6 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 96  LSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLS 197
           L +E+  +  P   +V VKI   G+C +D + L+
Sbjct: 16  LRLEQAPISKPGPRQVLVKINTVGICGSDVHFLT 49


>Z92834-3|CAB07384.1|  328|Caenorhabditis elegans Hypothetical
           protein F39B2.3 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 66  AAVAWEAGKPLSIEEIEVDPPK--AGEVRVKITATGVCHTDAYTLSGK 203
           AAV    G P  IE +E D P+    +V V+  A GV   D Y  +G+
Sbjct: 12  AAVVRRFGAPDVIEAVESDMPRLEKNQVLVRNYAAGVNPVDTYIRAGQ 59


>Z82081-5|CAB04958.1|  344|Caenorhabditis elegans Hypothetical
           protein W09H1.5 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
 Frame = +3

Query: 120 DPPKAGEVRVKITATGVCHTDAYTLSGKDP-EGVFPVVLXXXXXXXXXXXXXXXTSVKPG 296
           D P A +V V+  A  +   D   + G  P +   P V                +S+K G
Sbjct: 41  DKPSADQVLVQWIAAPINPADLNQIQGVYPVKPALPAVGGNEGFGKVISVGSNVSSIKVG 100

Query: 297 DHVVPLSHLEGNSFWR 344
           DHV+P     G   WR
Sbjct: 101 DHVIP--DRSGLGTWR 114


>Z70782-3|CAA94841.1|  347|Caenorhabditis elegans Hypothetical
           protein R04B5.5 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 96  LSIEEIEVDPPKAGEVRVKITATGVCHTDAY 188
           L +E++ +  P   +V VK+   G+C +D +
Sbjct: 16  LRLEQVPIPKPGPNQVLVKVHTVGICGSDVH 46


>Z66561-3|CAA91455.1|  422|Caenorhabditis elegans Hypothetical
           protein F08G12.3 protein.
          Length = 422

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +1

Query: 334 AFGGYKSRESVPKLVDEYLEKKLPLDEFV--THNVPLKEINEAF 459
           A   ++ R++V + +  Y+EKK  L EFV    N+ L+E++  F
Sbjct: 288 AIRSWEDRKAVAEHIHTYVEKKSLLHEFVRKISNIGLRELSGFF 331


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -2

Query: 223  GNTPSGSFPESVYASVWQTPVAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLP 44
            G++  G+   SV +S      +   T T+P+   STS SS    +P+S A       + P
Sbjct: 1533 GSSTVGATQTSVSSSTVPNTGSTGSTVTNPSTSSSTSGSSSTQSIPSSTAANTGSSTSGP 1592

Query: 43   TVDMT 29
            TV  T
Sbjct: 1593 TVATT 1597


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,937,770
Number of Sequences: 27780
Number of extensions: 314574
Number of successful extensions: 852
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)