Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3n15
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0570 - 4205739-4205776,4205846-4205897,4205939-4206067,420... 112 3e-25
06_03_0492 - 21386587-21386700,21387471-21387599,21387715-213877... 105 3e-23
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619... 29 3.0
01_06_0873 + 32617428-32617532,32618166-32618234,32619195-326193... 28 6.9
05_05_0103 - 22408832-22410041,22410500-22410628,22411600-224117... 28 9.1
>03_01_0570 -
4205739-4205776,4205846-4205897,4205939-4206067,
4206183-4206258,4206360-4206412,4206494-4206555,
4206624-4206734,4206813-4206979,4207089-4207268,
4207598-4207687,4207773-4207921,4208367-4208501,
4208575-4208630,4208790-4208823,4209409-4209519
Length = 480
Score = 112 bits (269), Expect = 3e-25
Identities = 63/169 (37%), Positives = 101/169 (59%), Gaps = 5/169 (2%)
Frame = +3
Query: 249 RKVAKVVVLGDIGRSPRMQYHALSLANN-GLDVKIISYVETDPLPEVLNNPHITVIKLHP 425
RK A VVVLGDIGRSPRMQYH+LSLAN G++V I++ +DP + NP I + ++
Sbjct: 10 RKRAAVVVLGDIGRSPRMQYHSLSLANQAGMEVDIVANGGSDPHLLLRENPSIHIHEMKS 69
Query: 426 FELKWGPVV---LKYIAKTLWQSVSLMFTL-FLTGRCDYLLGQNPPAIPSLPVFRLYCMV 593
+L + L + K Q + L++ L F R D + QNPP++P+L +L +
Sbjct: 70 VQLTGILKISGALTLLLKAAIQFIILIWYLCFKIPRPDVFIVQNPPSVPTLAAVKLASWL 129
Query: 594 SKAQFVIDWHNYAYSIMAMTLEPDHMLVRMARSTERFFGQSSHFNLCVT 740
A+F++DWHN+ Y+++ ++ H++V++ E+ FG+ + CVT
Sbjct: 130 RGAKFIVDWHNFGYTLLGLSHGRSHIIVKIYFWFEKHFGRMADGAFCVT 178
>06_03_0492 -
21386587-21386700,21387471-21387599,21387715-21387790,
21387898-21387950,21388034-21388095,21388164-21388274,
21388361-21388527,21388804-21388869,21389416-21389505,
21389592-21389740,21390182-21390316,21390399-21390454,
21390630-21390663,21391908-21392018
Length = 450
Score = 105 bits (253), Expect = 3e-23
Identities = 60/169 (35%), Positives = 99/169 (58%), Gaps = 5/169 (2%)
Frame = +3
Query: 249 RKVAKVVVLGDIGRSPRMQYHALSLANNG-LDVKIISYVETDPLPEVLNNPHITVIKLHP 425
R+ A VVLGDIGRSPRMQYH+LSLAN G ++V I++ +DP + NP I + ++
Sbjct: 10 RRRAAAVVLGDIGRSPRMQYHSLSLANQGGMEVDIVANGGSDPHLLLRENPLIHIHEMKS 69
Query: 426 FELKWGPVV---LKYIAKTLWQSVSLMFTL-FLTGRCDYLLGQNPPAIPSLPVFRLYCMV 593
+L + L + K Q + L++ L F R D + QNPP++P+L +L +
Sbjct: 70 VQLTGISKISGALSMLLKAAIQFIILIWYLCFKIPRPDVFIVQNPPSVPTLAAVKLASGL 129
Query: 594 SKAQFVIDWHNYAYSIMAMTLEPDHMLVRMARSTERFFGQSSHFNLCVT 740
A+ ++DWHN+ Y+++ ++ H++V++ E+ FG+ + CVT
Sbjct: 130 RGAKSIVDWHNFGYTLLGLSHGRSHIIVKIYFWFEKHFGRMADGAFCVT 178
>01_01_0009 +
57658-60086,60855-60935,61094-61295,61385-61905,
61996-62114,62248-62345
Length = 1149
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 384 VLNNPHITVIKLHPFELKWGPVVLKYIAKTL 476
VLN P TV LHPF +K+G ++ TL
Sbjct: 146 VLNLPGCTVPSLHPFAIKFGLDTHVFVCNTL 176
>01_06_0873 + 32617428-32617532,32618166-32618234,32619195-32619380,
32619687-32619776,32620389-32620462,32621149-32621260,
32621413-32621468,32621826-32621880,32621965-32622021,
32622696-32622797,32623467-32623547,32623756-32623808,
32625245-32625314,32626540-32626603,32627339-32627487,
32627564-32627719,32628011-32628108,32628763-32628847,
32628932-32628997,32629066-32629125,32629408-32629494,
32630307-32630360,32630538-32630576,32630651-32630779,
32630859-32630911,32630984-32631032,32632240-32632298,
32633111-32633259,32633338-32633492,32633719-32633847,
32633932-32634017,32634220-32634335,32634429-32634541,
32635335-32635458,32635540-32635658,32636289-32636490,
32636586-32636757,32637852-32638176,32638442-32638529,
32638970-32639059,32639169-32639370,32639681-32639705
Length = 1450
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +3
Query: 429 ELKWGPVVLKYIAKTLWQSVSLMFTLFLTGRCDYLLGQNPPAIPSL 566
+ K G K+ W+ V+ ++ FL G C +L + P++ S+
Sbjct: 1243 DCKSGMSSYKFSRARFWKEVADVYETFLVGSCGRVLSSDVPSVDSV 1288
>05_05_0103 -
22408832-22410041,22410500-22410628,22411600-22411703,
22411780-22411874,22412483-22412540,22412741-22412792,
22415399-22415532
Length = 593
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 359 RRDRPTP*SPKQPAYYRHKTSSFRTEMGPCSTQIHCQNFMAECKLNVYPI 508
+RD+PTP R + F T +G C+T Q+F L++ P+
Sbjct: 451 KRDKPTPAEDNDLKIGRLSSDDFHTPIGKCTTD-SPQSFKTAALLSLGPM 499
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,335,753
Number of Sequences: 37544
Number of extensions: 441685
Number of successful extensions: 883
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -