Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3n15
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical pr...   104   8e-23

>U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical
           protein T26A5.4 protein.
          Length = 487

 Score =  104 bits (249), Expect = 8e-23
 Identities = 66/182 (36%), Positives = 98/182 (53%), Gaps = 18/182 (9%)
 Frame = +3

Query: 249 RKVAKVVVLGDIGRSPRMQYHALSLANNGLDVKIISYVETDPLPEVLNNPHITVIKLHPF 428
           R  A VVVLGD+GRSPRM  HA  LA+ G DVK+I + ++ P  +++N+P I ++ + P 
Sbjct: 12  RSEAAVVVLGDVGRSPRMCNHAKMLADEGFDVKLIGFFDSIPGEQIMNHPRIKIVGIPPP 71

Query: 429 E--LKWGPVVLKYIAKTLWQSVSLMFTL-FLTGRCD--YLLGQNPPAIPSLPVFRLYCMV 593
              +   P  ++   K  W  ++L   L F T   +   +L QNPPA+P++ V  ++ + 
Sbjct: 72  PDFMDSLPAFVQLPLKLFWNFITLFLALAFQTSAFNLRIILMQNPPALPTMIVCFMFSIF 131

Query: 594 SKAQFVIDWHNYAYSIM--AMTLEPDHM-----------LVRMARSTERFFGQSSHFNLC 734
             A+F IDWHNY YSI+     L  D +           +VR     E   G+ S +NLC
Sbjct: 132 KFAKFSIDWHNYMYSILQNKYQLTDDQVFGNDKKTKKAQIVRCVGFLEGLCGKLSDYNLC 191

Query: 735 VT 740
           VT
Sbjct: 192 VT 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,428,640
Number of Sequences: 27780
Number of extensions: 380807
Number of successful extensions: 936
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)