Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3n10
         (230 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    31   0.015
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    28   0.19 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   0.58 
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    24   2.3  
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...    23   4.1  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    23   5.4  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    23   5.4  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    23   5.4  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    23   5.4  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    23   5.4  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    23   7.2  
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    22   9.5  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    22   9.5  
SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyce...    22   9.5  

>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 31.5 bits (68), Expect = 0.015
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 10  PNVSTEPRYKHNWIEYFYIYGDNTCLIKIS 99
           P +S E      W EYF +YG N  LI++S
Sbjct: 182 PRISRERAKLRMWKEYFLLYGANLSLIRVS 211


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 159 KKTLL*FHHATLITNTKLIRTNFDETCIISIN 64
           KK  L +HH+T  T TK  + +FD   + S++
Sbjct: 82  KKPFLDYHHSTSNTPTKKKKDSFDHASVTSLH 113


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 22   TEPRYKHNWIEYFYIYGDNTCLIKIS 99
            TE +Y H ++EYF     N+C ++ +
Sbjct: 2714 TEIKYLHQFVEYFAQKSPNSCALEFA 2739


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 10  PNVSTEPRYKHNWIEYFYIYG 72
           P ++  PRY  NW+ Y +I G
Sbjct: 121 PIMNWLPRYNWNWLVYDFIAG 141


>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 123 ITNTKLIRTNFDETCIISINVKIFNPVVFVT 31
           +TN K +RT  D+ C  ++ +K+ N +  VT
Sbjct: 324 VTNVKRLRTAIDKKCANALLLKV-NQIGSVT 353


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
            Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 111  KLIRTNFDETCIISINVKIFNPVVFVT 31
            K I ++F+    I +++K  NPV+F+T
Sbjct: 950  KYIFSSFNPDICILLSLKSTNPVLFLT 976


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 23  RSHVTNTTGLNIFTFMEIIHVSSK 94
           +S  TNT+    FTF EI+ + SK
Sbjct: 423 QSFTTNTSSF-AFTFKEIVQLGSK 445


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 98  VRISFVFVMRVA**NHNNVFLTFFCSGFFAYYNYVYKISNNKK 226
           +++ FV    V+   H +    F     FA+YNYV  + ++K+
Sbjct: 258 MQVPFVGFQPVSTSEHMSALGVFGLLQLFAFYNYVKGLVSSKQ 300


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 67  KCKNIQSSCVCNVAPLTRLA 8
           KC NI SSC+ +  P  R++
Sbjct: 393 KCINIVSSCIFDGKPQNRIS 412


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = +2

Query: 92  KLVRISF-VFVMRVA**NHNNVF-LTFFCSGFFAYYNYVYKISNNKKK 229
           K+VR  F ++V+ +     +++F L  F  GF + ++ ++ +S+ KKK
Sbjct: 125 KIVRAPFYIYVLLILSKRLHSIFILRLFNDGFNSLFSSLFILSSCKKK 172


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 108 LIRTNFDETCIISINV 61
           LI ++ D+TC++ IN+
Sbjct: 339 LIASDSDDTCLLKINI 354


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 1   GQLPNVSTEPRYKHNWIEYFY 63
           G LPN S  PRY    I+  +
Sbjct: 193 GYLPNSSVNPRYTPKTIQALF 213


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 7   LPN-VSTEPRYKHNWIEYFYIYGDNTC 84
           LP+ V   P+YK     Y Y Y  ++C
Sbjct: 346 LPSTVIGNPKYKDIQAAYLYYYASDSC 372


>SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 173 SGFFAYYNYVYKISNNKKK 229
           S FF Y  Y + I+  K+K
Sbjct: 16  SAFFLYRQYAHTITQQKRK 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 847,614
Number of Sequences: 5004
Number of extensions: 12456
Number of successful extensions: 37
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)