Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3n10
         (230 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1113 - 30986757-30986780,30986781-30987273,30987437-309879...    29   0.70 
03_06_0058 - 31330067-31330978                                         27   2.1  
12_02_0910 + 24225180-24225415,24225523-24225678,24226387-242264...    25   6.5  
03_01_0282 + 2181598-2183124                                           25   6.5  

>04_04_1113 -
           30986757-30986780,30986781-30987273,30987437-30987959,
           30988361-30988615,30988812-30988926,30989026-30989078,
           30989213-30989265,30989419-30989473,30989549-30989599,
           30989776-30990024,30990122-30990350,30990994-30991305
          Length = 803

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 50  LNIFTFMEIIHVSSKLVRISFVFVMRVA**NHNNVFLTFFCSGFFAYYNYVYKISN 217
           L  F  ++IIH S K +   ++ V+        N FL F C GF   +  +Y + N
Sbjct: 408 LGCFPRLKIIHTSRKFMAKIYIPVV--------NWFLLFSCLGFILLFRSIYDVGN 455


>03_06_0058 - 31330067-31330978
          Length = 303

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -3

Query: 141 FHHATLITNTKLIRTNFDETCIISI---NVKIFNPVV 40
           F H T + N KL +  FD+ C  +I   N+ + N ++
Sbjct: 32  FAHLTRLLNLKLTKVEFDKLCYATIGRENIALHNALI 68


>12_02_0910 +
           24225180-24225415,24225523-24225678,24226387-24226450,
           24226738-24226947,24227678-24227866,24228044-24228342,
           24228575-24228851,24229045-24229317,24230316-24230549,
           24230707-24230856
          Length = 695

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 158 LTFFCSGFFAYYNYVYKISNNK 223
           L +FC G+F Y N ++ + + K
Sbjct: 555 LVYFCLGYFIYRNQLFNVYSPK 576


>03_01_0282 + 2181598-2183124
          Length = 508

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 152 VFLTFFCSGFFAYYNYVYKISN 217
           + L+F C GFF YY+   K  N
Sbjct: 11  LLLSFLCFGFFYYYHVKSKQKN 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,759,390
Number of Sequences: 37544
Number of extensions: 62704
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 14,793,348
effective HSP length: 55
effective length of database: 12,728,428
effective search space used: 267296988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)