Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3n10
         (230 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42830-5|AAC48280.2|  437|Caenorhabditis elegans Hypothetical pr...    26   3.1  
AC024809-9|AAO12399.1|  700|Caenorhabditis elegans Hypothetical ...    26   3.1  
AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical ...    26   3.1  
Z78065-3|CAB01517.2|  406|Caenorhabditis elegans Hypothetical pr...    26   4.1  

>U42830-5|AAC48280.2|  437|Caenorhabditis elegans Hypothetical
           protein C53B7.7 protein.
          Length = 437

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 164 FFCSGFFAYYNYVYKISN 217
           FFC   F YY+Y Y+  N
Sbjct: 95  FFCKLLFIYYDYQYRFIN 112


>AC024809-9|AAO12399.1|  700|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2b protein.
          Length = 700

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = -3

Query: 183 KKPEQKNVKKTLL*FHHATLITNTKLIR---TNFD 88
           + PE+K  KK+    HHA  I   KL R   T FD
Sbjct: 46  RAPEKKETKKSRKILHHAAEIYTKKLYRQVATGFD 80


>AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2a protein.
          Length = 741

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = -3

Query: 183 KKPEQKNVKKTLL*FHHATLITNTKLIR---TNFD 88
           + PE+K  KK+    HHA  I   KL R   T FD
Sbjct: 87  RAPEKKETKKSRKILHHAAEIYTKKLYRQVATGFD 121


>Z78065-3|CAB01517.2|  406|Caenorhabditis elegans Hypothetical
           protein T09E8.4 protein.
          Length = 406

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 141 FHHATLITNTKLIRTNFDETCIISINVKIFNPVVFVTWL 25
           FH+A LI+N  +    F       +  KIF+  +   WL
Sbjct: 187 FHYAILISNMVIAIQRFCVFFFRQLTAKIFDSFIIYEWL 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,715,862
Number of Sequences: 27780
Number of extensions: 71429
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 12,740,198
effective HSP length: 56
effective length of database: 11,184,518
effective search space used: 223690360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)