Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3n10
         (230 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   0.86 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   1.1  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   2.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   2.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   2.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   2.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    19   6.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    19   6.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   6.1  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    19   8.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    19   8.0  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 0.86
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 188 YYNYVYKISNNKKK 229
           +YN VYK+ +N KK
Sbjct: 558 FYNVVYKLIDNIKK 571


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 1.1
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = +1

Query: 28  PRYKHNWIEYFYIYGDNTCLIK 93
           P   + W  + Y++G+  C+I+
Sbjct: 109 PEIYYIWSHFPYVFGEAFCIIQ 130


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 2.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 61  YIYGDNTCLIKISTN 105
           Y + DN  L+ ISTN
Sbjct: 108 YEFSDNELLVHISTN 122


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 85  DMYYLHKCKNI 53
           D ++LHK KNI
Sbjct: 277 DKWFLHKMKNI 287


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 183 KKPEQKNVKKTLL*FHHATLITNTKLIRTNFDETCIISIN 64
           KK E+KN+    +    + ++TN      N   T +IS++
Sbjct: 812 KKSEEKNINDHCVTTEQSVVVTNV-TTTINTPTTSVISMS 850


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 52  EYFYIYGDNTCL 87
           EY Y+Y + TC+
Sbjct: 565 EYEYVYDEYTCM 576


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 133 RDPHNKYETNSY 98
           R P  K+ETN Y
Sbjct: 360 RRPQYKFETNRY 371


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 133 RDPHNKYETNSY 98
           R P  K+ETN Y
Sbjct: 360 RRPQYKFETNRY 371


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.4 bits (38), Expect = 6.1
 Identities = 5/5 (100%), Positives = 5/5 (100%)
 Frame = -1

Query: 152 HCCDF 138
           HCCDF
Sbjct: 748 HCCDF 752


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 194 NYVYKISNNKKK 229
           NY Y  +NN KK
Sbjct: 95  NYKYNYNNNCKK 106


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 176 GFFAYYNYVYKISNNKKK 229
           GF   Y YV  +SN  +K
Sbjct: 368 GFPLEYEYVLAVSNRIQK 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,126
Number of Sequences: 438
Number of extensions: 1016
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3785850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)