Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3n06
         (310 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens ...    32   0.30 
AK128348-1|BAC87394.1|  129|Homo sapiens protein ( Homo sapiens ...    32   0.30 
AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    32   0.30 
AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens ...    29   2.8  
AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens ...    28   6.4  

>AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46861 fis, clone UTERU3011092. ).
          Length = 291

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -3

Query: 182 YNC*YLIFTVYLHSYSHILSNLHHXTISY-HMLIYTY---DIRNHMCVY 48
           + C ++   VY+  Y HI   +H    SY HM  Y Y    I  HMCVY
Sbjct: 195 HRCIFIYTYVYICVYIHIYICIHVCVYSYIHMYTYVYIHVYIGIHMCVY 243



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = -3

Query: 212 YYLFSFLIYYYNC*YLIFTVYLHSYS----HILSNLHHXTISYHMLIYTYDIRNHMCV 51
           Y      I+ Y C ++    Y+H Y+    H+   +H    SY M  YTY +  H+C+
Sbjct: 203 YVYICVYIHIYICIHVCVYSYIHMYTYVYIHVYIGIHMCVYSY-MHRYTY-VYIHICI 258


>AK128348-1|BAC87394.1|  129|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46490 fis, clone THYMU3027540. ).
          Length = 129

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -3

Query: 209 YLFSFLIYYYNC*YLIFTVYLHSYSHILSNLHHXTISYHMLIYTYD 72
           +++ ++ + Y C Y+ +    H+Y H+    H     YH+ IY +D
Sbjct: 73  HIYMYVYHAYMCMYITYMCVYHTYMHV---YHTYMCVYHIYIYMHD 115


>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -3

Query: 209 YLFSFLIYYYNC*YLIFTVYLHSYSHILSNLHHXTISYHMLIY 81
           YL+ F IY Y C Y+   +YL+ +++I   L H  I  H+ IY
Sbjct: 46  YLYIF-IYIYICLYIYLYIYLYIFTYIYIYL-HIFIYLHIFIY 86


>AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46559 fis, clone THYMU3040126. ).
          Length = 303

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 191 IYYYNC*YLIFTVYLHSYSHILSNLH-HXTISYHMLIYTY 75
           IY Y C Y+    + + ++H+   +H H  I  +M +YT+
Sbjct: 25  IYTYTCMYVCIYSHTYIHTHVYVCVHIHICIHMYMCVYTH 64



 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -3

Query: 191 IYYYNC*YLIFTVYLHSYSHILSNLH---HXTISYHMLIYTYDIRNHMCV 51
           IY Y C  +    Y+H++ ++  + H   H  +  +  IYTY     MCV
Sbjct: 141 IYTYTCVCVCTHAYIHTHVYVCVHTHIYIHMCVCVYTRIYTYTC---MCV 187


>AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42815 fis, clone BRCAN2014143. ).
          Length = 189

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 188 YYYNC*YLIFTVYLHSYSHILSNLHHXT-ISYHMLIYTY 75
           Y Y C Y    +Y+H Y  I   LH  T I  ++ IY Y
Sbjct: 4   YIYMCVYPYICIYMHVYPCICIYLHVYTYICMYIHIYPY 42


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,602,499
Number of Sequences: 237096
Number of extensions: 294792
Number of successful extensions: 343
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1400773776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)