Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3n06
         (310 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19154-3|CAA79555.1|  291|Caenorhabditis elegans Hypothetical pr...    27   2.0  
AF047657-3|AAK18947.2|  326|Caenorhabditis elegans Serpentine re...    27   2.7  
AL132858-1|CAB60474.1|  325|Caenorhabditis elegans Hypothetical ...    26   4.7  
AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical...    26   4.7  
AF016443-13|AAC24275.2|  333|Caenorhabditis elegans Serpentine r...    25   8.1  

>Z19154-3|CAA79555.1|  291|Caenorhabditis elegans Hypothetical
           protein C40H1.4 protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 197 FLIYYYNC*YLIFTVYLHSYSHILSNLHHXTISY--HMLIYTY 75
           FL YY++   LI+TV+     H  +   +  ++Y  H L+YTY
Sbjct: 160 FLHYYHHAAVLIYTVH-SGAEHTAAGRFYILMNYFAHSLMYTY 201


>AF047657-3|AAK18947.2|  326|Caenorhabditis elegans Serpentine
           receptor, class h protein272 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 170 YLIFTVYLHSYSHILSNLHHXTISYHMLIYT 78
           Y  ++VY  SY+   +N+    IS H LI T
Sbjct: 254 YFAYSVYFDSYNQAYNNISFIIISCHGLIST 284


>AL132858-1|CAB60474.1|  325|Caenorhabditis elegans Hypothetical
           protein Y113G7A.1 protein.
          Length = 325

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -3

Query: 167 LIFTVYLHSYSHILSNLHHXTISYHMLIYT 78
           +I+ VY+H  + +L+NL    +++H ++ T
Sbjct: 256 VIYIVYIHHQNQLLNNLIVFCLAFHGIVST 285


>AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.6 protein.
          Length = 271

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -3

Query: 194 LIYYYNC*YLIFTVYLHSYSHILSNLHHXTISYHMLIYT 78
           +IY  +  Y I+ +Y+    + +  ++H    YH+  YT
Sbjct: 15  IIYIKSTIYYIYHIYIPYTIYTIHQIYHIYYIYHIYTYT 53


>AF016443-13|AAC24275.2|  333|Caenorhabditis elegans Serpentine
           receptor, class h protein190 protein.
          Length = 333

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 218 VAYYLFSFLIYYYN 177
           VAY L SF +YYYN
Sbjct: 261 VAYMLASFSLYYYN 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,028,655
Number of Sequences: 27780
Number of extensions: 56499
Number of successful extensions: 260
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)