Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3n05
         (439 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0205 + 20897376-20897597,20898623-20898774,20899874-209000...    59   2e-09
01_06_0427 - 29273872-29273966,29275507-29275609,29275702-29276058     50   8e-07
02_05_1187 + 34820577-34820757,34820930-34820961,34832101-348321...    29   2.2  
01_01_0962 + 7570490-7570796,7571984-7572540,7572702-7572749,757...    28   2.9  
11_01_0185 + 1455635-1455817,1455997-1456051,1456415-1456611,145...    27   6.6  
07_01_1167 + 11030200-11031165,11031273-11031407,11031509-11031874     27   6.6  
07_03_1673 - 28532923-28533009,28533058-28533117,28533664-285337...    27   8.7  

>02_04_0205 +
           20897376-20897597,20898623-20898774,20899874-20900084,
           20900734-20900872,20901310-20901341,20901471-20901557,
           20901720-20901932,20903687-20903869,20903979-20904084,
           20905042-20905064,20905511-20905570
          Length = 475

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 26/50 (52%), Positives = 36/50 (72%)
 Frame = +2

Query: 227 VREFKGKVYVDIREFYEKNGELLPGKKGISLTPEQWRKLLSVGEEVNETV 376
           VR + GKV VDIREFYEK+G+ LPG+KGI L  +QW+ L    + ++E +
Sbjct: 422 VRTWNGKVVVDIREFYEKDGKTLPGRKGIQLPMDQWKILRDNIKAIDEAI 471


>01_06_0427 - 29273872-29273966,29275507-29275609,29275702-29276058
          Length = 184

 Score = 50.0 bits (114), Expect = 8e-07
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
 Frame = +2

Query: 128 EDRNPPAEKKAKMADRTNDKEPTWVL---QGKKLLKVREFKGKVYVDIREFYEKNGELLP 298
           E+     E++     R  D E   +L     ++ + ++EFKGK  + IRE+Y K+G+ LP
Sbjct: 92  EEEEEEEEERGGGTKREYDDEGDLILCRLSARRRVTLQEFKGKTLLSIREYYFKDGKELP 151

Query: 299 GKKGISLTPEQW 334
             KGISLT EQW
Sbjct: 152 A-KGISLTVEQW 162


>02_05_1187 +
           34820577-34820757,34820930-34820961,34832101-34832159,
           34832772-34833183
          Length = 227

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = +2

Query: 149 EKKAKMADRTNDKEPTWVLQGKKLLKVREFKGKVYVDIREFYEKNGELLPGKKGISLTPE 328
           E + ++A  + D  P    QG      +   G + V++ EF+ +NGE   G+ GISL  +
Sbjct: 151 ESRREVAFTSIDPRPP---QGSAAYPQKRADGWMEVELGEFFNENGE--DGEVGISLMSK 205

Query: 329 --QWRK-LLSVGEEV 364
              W++ L+ +G E+
Sbjct: 206 GPNWKRGLIVLGIEI 220


>01_01_0962 +
           7570490-7570796,7571984-7572540,7572702-7572749,
           7572841-7573789,7574573-7575528
          Length = 938

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 63  REKKNLRTRKTIVLVVTVMTALKIGTLLLKKRQKWQTGLMIKSQHGCYR 209
           R KK LRT K +    T    L+I  +L+ + +  +T +  ++  GC+R
Sbjct: 479 RMKKCLRTLKVVGNGDTNEVCLQISNVLIIETEDLKTNVHFENSEGCFR 527


>11_01_0185 +
           1455635-1455817,1455997-1456051,1456415-1456611,
           1456850-1457206,1457355-1457424,1457527-1457672,
           1457786-1457831,1457910-1457962,1458507-1458651,
           1459268-1459386,1459494-1459565,1459872-1459975,
           1460117-1460173,1460260-1460452,1460535-1460678,
           1460825-1460927,1461444-1461592,1462674-1462728,
           1464037-1464227,1464580-1464701,1464831-1464978,
           1465354-1465423,1465499-1465644,1466097-1466247,
           1466614-1466732,1466807-1466848,1466849-1466961,
           1467496-1467552,1467642-1467834,1468040-1468183,
           1468567-1468665
          Length = 1280

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -2

Query: 384 MELTVSLTSSPTDNNFLHCSGVRLIPFL 301
           +ELTVSLTSS    N L  + + L+PFL
Sbjct: 165 VELTVSLTSSDGSQN-LASTTIPLVPFL 191


>07_01_1167 + 11030200-11031165,11031273-11031407,11031509-11031874
          Length = 488

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 176 TNDKEPTWVLQGKKLLKVREFKG 244
           T+ + PTW L   KL +V EF+G
Sbjct: 117 TDHRGPTWRLSITKLARVNEFRG 139


>07_03_1673 -
           28532923-28533009,28533058-28533117,28533664-28533732,
           28534757-28534862,28535058-28535203,28535805-28536017,
           28536523-28536546,28536647-28536704,28536739-28537022,
           28538890-28539063,28539427-28539825
          Length = 539

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 221 LKVREFKGKVYVDIREFYEKNGELLPGKKGISLTPEQWRKLLSVGEEV 364
           + ++E+K   Y  I  + EK  + + GK   +  P  WR+   V +EV
Sbjct: 4   INIQEYKTVRYHFILLYLEKQKKNIRGKTWAAANPNPWRRRPIVVDEV 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,798,177
Number of Sequences: 37544
Number of extensions: 146208
Number of successful extensions: 368
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)