Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3n01
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0031 - 305457-305663,306248-306523,306824-307609                 32   0.41 
10_02_0112 + 5385660-5385821,5386337-5386876                           31   1.2  
08_02_1549 - 27808389-27808524,27809274-27809384,27811248-27811720     30   1.6  
04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002     30   1.6  
03_06_0520 - 34487664-34488274,34488785-34488974,34489585-344910...    28   6.6  
05_07_0358 - 29534744-29534974,29535075-29535145,29535894-29535906     28   8.7  

>06_01_0031 - 305457-305663,306248-306523,306824-307609
          Length = 422

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 5/104 (4%)
 Frame = +1

Query: 373 NTMIIQHENPKCP----IEFTYPETDMQSACSALLKN-RNGQSVPPPIKSNLRPIACEIP 537
           NT+++  E  KCP    IE   PE D  + C A+ K    G       + + +  A  I 
Sbjct: 227 NTVVVNKEQKKCPFSVKIEEIPPEEDNTAGCVAIRKAFALGNGKAKKKELSPQDAALLIQ 286

Query: 538 LSHFKELVESNDFLLCFNLETSTMVKILSLKRIFCIFQYRKQPA 669
           L++   L   +  L C         K+  ++ +F    YR + A
Sbjct: 287 LNYRAHLAHRSQVLRCLRDLAVAKAKLKEIRSLFYNISYRHRMA 330


>10_02_0112 + 5385660-5385821,5386337-5386876
          Length = 233

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
 Frame = +1

Query: 358 NLFYCNTMIIQHENPKCPIEFTYPETDMQSACSALLK-NRNGQSVPPPIKSNLRPIACEI 534
           +LF CN + +      C     Y  + + S  S LLK  RN    PP + S++  I    
Sbjct: 34  SLFQCNGVCM------CLSTLRYLSSSLLSRVSHLLKVGRNNFRPPPKVDSSVVRIEPRK 87

Query: 535 PLSHFKELVESNDFLLCFNLETSTMVKILSLKRI 636
           PL             LCFN +  T+  I   KR+
Sbjct: 88  PLPPVSFKEWDGLVRLCFNRKNKTLGAIFKQKRV 121


>08_02_1549 - 27808389-27808524,27809274-27809384,27811248-27811720
          Length = 239

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +1

Query: 229 DVNIDSRSPKKTASA---TIVYWNPLMPITEIGAGETRVFSVLLTNNLFYCNTMIIQHEN 399
           DVN+D R    TA+    T    NP  P+    AG+ R FS       FY +  +  H+N
Sbjct: 22  DVNLDLRLVHSTAAGRQHTAATRNPAPPLA--AAGDDRAFSCTYCRRRFYSSQALGGHQN 79


>04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002
          Length = 877

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 82  EETQKSDR*YKLESETGIPSRCICLHL 2
           EE   SD  +KLE E+G PS C  L+L
Sbjct: 817 EEANTSDHDHKLEIESGAPSSCFDLNL 843


>03_06_0520 -
           34487664-34488274,34488785-34488974,34489585-34491045,
           34491149-34491163
          Length = 758

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/55 (32%), Positives = 21/55 (38%)
 Frame = +1

Query: 409 PIEFTYPETDMQSACSALLKNRNGQSVPPPIKSNLRPIACEIPLSHFKELVESND 573
           P+    P TD  S CS  LK  N   V P I   +    CE+       L   ND
Sbjct: 529 PVSILEPPTDEDSCCSGYLK--NDSQVMPSIDKQI--YGCELRYEQEVSLSSDND 579


>05_07_0358 - 29534744-29534974,29535075-29535145,29535894-29535906
          Length = 104

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +1

Query: 127 ENLIVYVPTDDDRLYI---DKKQFPKFNSVLVYRHEHDVNIDSRS 252
           +N ++YV TDD +L I      +FP+    LV+  E +++  S++
Sbjct: 39  DNAVMYVKTDDQKLVIGTLSADKFPQIQFDLVFDKEFELSHTSKT 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,239,001
Number of Sequences: 37544
Number of extensions: 425064
Number of successful extensions: 1149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)