Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3m20
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   1.1  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    28   1.1  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    27   2.5  

>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 400 PYCMESCQNATHYCPNCNAYIGT 468
           PY + +C N T Y  NCN+ + T
Sbjct: 203 PYLVNTCFNGTQYPVNCNSALRT 225


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = +3

Query: 291 LLYRGHRN*GSTRCFEQDSSFCVNPLFDRMLAMCLHPLLHGKLSKCYSLLSELQRLHWNL 470
           +LY G    G  R F++      NP++D  +  CL+P L GKL   + +  E+ R+ W +
Sbjct: 164 VLYTGTLLFGD-RLFDKPHRLSGNPIYDAFMGACLNPRL-GKLLD-FKMFFEV-RIPWFI 219

Query: 471 YKLMSL 488
              +S+
Sbjct: 220 LFFISV 225


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 402 LLHGKLSKCYSLLSELQRLHWNLY 473
           +L G +S+C S+ S  Q+LH N+Y
Sbjct: 133 VLQGNISQCLSVASTFQKLH-NMY 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,873,196
Number of Sequences: 5004
Number of extensions: 31865
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)