Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3m20
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0448 - 24426509-24426737,24427306-24427401,24427723-244278...    28   6.0  
01_06_1070 - 34286660-34287380,34288020-34288094,34288534-342886...    28   6.0  
01_01_1043 + 8228201-8228209,8228364-8228439,8228527-8228903           27   7.9  

>03_05_0448 -
           24426509-24426737,24427306-24427401,24427723-24427847,
           24428694-24428846,24429921-24430247,24431415-24431630,
           24431768-24432112,24433897-24434253
          Length = 615

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 246 HNRHELLRSHDGDDRNISIWN 184
           H RHE L    GDD N+ IW+
Sbjct: 427 HLRHEYLFGSVGDDHNLLIWD 447


>01_06_1070 -
           34286660-34287380,34288020-34288094,34288534-34288636,
           34288866-34289091
          Length = 374

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 92  WLTLNIKEICLARTMGLLHKIRLLTT 169
           WL  NIKEI  +  +GL+H+I +L++
Sbjct: 146 WLVTNIKEIKDSGCIGLVHEIGVLSS 171


>01_01_1043 + 8228201-8228209,8228364-8228439,8228527-8228903
          Length = 153

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 388 CACIPYCMESCQNATHYCPNCNAY 459
           CAC+  C  SC ++    P+C  Y
Sbjct: 102 CACVKVCAASCHHSPCSLPDCYFY 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,408,406
Number of Sequences: 37544
Number of extensions: 216703
Number of successful extensions: 656
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)