Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3m12
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    49   8e-07
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    27   2.1  
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    27   2.8  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    26   6.5  
SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|c...    26   6.5  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 48.8 bits (111), Expect = 8e-07
 Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
 Frame = +1

Query: 388 DMRREEERLKTFDQ--WPVTFLTPEQLARNGFYYLG--------RGDEVCCAFCKVEIMR 537
           +M    +RL TF +  WP    TPE LA  GFYY          R D V C  C      
Sbjct: 18  EMCNYSKRLDTFQKKKWPRAKPTPETLATVGFYYNPISESNSEERLDNVTCYMCTKSFYD 77

Query: 538 WVEGDDPAADHRRWAPQCPF 597
           W + DDP  +H   +P CP+
Sbjct: 78  WEDDDDPLKEHITHSPSCPW 97



 Score = 36.3 bits (80), Expect = 0.005
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +1

Query: 451 PEQLARNGFYY---LGRGDEVCCAFCKVEIMRWVEGDDPAADHRRWAPQCPF 597
           P  +A +GF Y       D   C +C + +  W   DDP  +H+R    C F
Sbjct: 141 PSVMAASGFVYNPTADAKDAAHCLYCDINLHDWEPDDDPYTEHKRRRADCVF 192


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 592 PFVRKQMYANAGGEATAVGRDECGA-SAATQPPRMPGPVHARYSTEAAR 735
           PF R Q++ANAGG +     + CG   +    P +   +   Y+T AAR
Sbjct: 398 PF-RLQLFANAGGLSNLTSPNPCGTYKSILSKPCISTGLGLVYATPAAR 445


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = -2

Query: 630 SPSVGIHLFSYKGTLGRPSPMIGSRIVAFDPPHDFYLTESTAHLVAATEVVESVAGQLF 454
           +P+V  ++++Y G+      ++ S I   +P   +Y+     H   + +   SVA Q+F
Sbjct: 104 NPTVRDNVYAYLGSQRNTKVVLTSHIDTVNPFLPYYIEGDKIHGRGSCDAKSSVAAQIF 162


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -1

Query: 643 QRSPLPQRWHTFVFVQRDTGAPISDDRQQDRRLRPTS*F 527
           QR P  QRW     +Q  +G P+    Q  RR RP S F
Sbjct: 378 QRLPAFQRW-----IQLVSGLPLRSFHQVGRRFRPGSDF 411


>SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -2

Query: 537 PHDFYLTESTAHLVAATEVVESVAGQLFRRQKRNGPLIKCFQTFLFT 397
           P+D Y+T   +H++ A++ +  +   L    + N P  KC+++  FT
Sbjct: 88  PNDSYMTGWKSHVLGASKEILDIYSVLCTLNEFNNP--KCYRSNGFT 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,826,817
Number of Sequences: 5004
Number of extensions: 56837
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)