Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3m12
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0027 - 225670-225870,225989-226126,226315-226392,226523-22... 33 0.24
11_01_0027 - 199196-199396,199514-199651,200207-200284,200419-20... 33 0.24
04_04_1073 - 30606472-30606515,30606897-30606988,30607152-306072... 30 1.7
08_02_0210 + 14324539-14324609,14324735-14325740,14325838-143273... 30 2.2
08_01_0100 - 714244-715461 29 3.9
10_07_0132 + 13263577-13263732,13265391-13265456,13265607-132657... 29 5.1
01_06_0507 - 29893563-29894470,29895227-29895419 29 5.1
11_01_0687 - 5651002-5651453,5651535-5651951,5652621-5653338,565... 28 6.8
10_08_0095 + 14760292-14760624,14760689-14761000,14761768-147624... 28 6.8
07_03_1782 + 29477748-29478169,29478257-29478413,29478518-294786... 28 6.8
04_01_0222 - 2805329-2805780,2805866-2806611,2806730-2806778,280... 28 6.8
03_05_0361 - 23448459-23448910,23448990-23449406,23449542-234497... 28 6.8
01_06_0282 - 28160321-28160417,28160585-28160653,28161090-281611... 28 9.0
>12_01_0027 -
225670-225870,225989-226126,226315-226392,226523-226708,
226853-226945,227797-227863,228660-228964
Length = 355
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -2
Query: 504 HLVAATEVVESVAGQLFRRQKRNGPL-IKCFQTFLFTTHVGHIRKEVECVV 355
HLV AT+ V G+ +R +++GPL + F L + V H +V VV
Sbjct: 285 HLVEATKAARPVLGRYYREPEKSGPLPLHLFGVLLRSLRVDHFVSDVGDVV 335
>11_01_0027 -
199196-199396,199514-199651,200207-200284,200419-200604,
200754-200846,201665-201731,202374-202675
Length = 354
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -2
Query: 504 HLVAATEVVESVAGQLFRRQKRNGPL-IKCFQTFLFTTHVGHIRKEVECVV 355
HLV AT+ V G+ +R +++GPL + F L + V H +V VV
Sbjct: 284 HLVEATKAARPVLGRYYREPEKSGPLPLHLFGVLLRSLRVDHFVSDVGDVV 334
>04_04_1073 -
30606472-30606515,30606897-30606988,30607152-30607243,
30607362-30607469,30607614-30607748,30607826-30607871,
30608320-30608420,30608512-30608649,30608721-30608819,
30608920-30609036,30609941-30610102,30610271-30610330,
30611120-30611216,30611238-30611296,30611364-30611480,
30611922-30612020,30612115-30612180,30612405-30612542,
30612659-30612742,30612820-30612892,30612937-30612992,
30613074-30613182,30613253-30613335,30613406-30613489,
30613679-30613750,30613827-30613904,30613984-30614067,
30614142-30614212,30614497-30614566,30614866-30614955,
30615046-30615177,30615250-30615350,30615634-30615691,
30615762-30615878,30617981-30618133
Length = 1094
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = -3
Query: 230 ITNVAAAPFLATFVNSIGIFFLFFSNA*NVYSYVFV*SLTLVLQKQNSMKFQNVNAARQN 51
I VAAA LA + + GI ++ A ++ + V +T + S++FQN+N +QN
Sbjct: 201 ILMVAAAVSLALGITTEGIKEGWYDGASIAFAVLLVVVVTATSDYKQSLQFQNLNEEKQN 260
>08_02_0210 +
14324539-14324609,14324735-14325740,14325838-14327390,
14327473-14327601,14328345-14328510
Length = 974
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 568 HRRWAPQCPFVRKQMYANAGGEATAVGRDECGASAAT 678
HR +P+CP +++ N+ + +G C A A+T
Sbjct: 862 HRATSPKCPLNSQKIMKNSDKQGRPLGSTSCAAGAST 898
>08_01_0100 - 714244-715461
Length = 405
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -3
Query: 692 MRGGCVAALAPHSSLPTAVASPPALAYICFRTKGHWGAHLR*SAAGSSPS 543
+ G A+APH ++ PAL + C R + A++R + G PS
Sbjct: 112 LSGELELAVAPHRNVTGKATVFPALGHACARFQDDLEAYMRYTPGGECPS 161
>10_07_0132 +
13263577-13263732,13265391-13265456,13265607-13265705,
13267020-13267084,13267210-13267294,13267389-13267422,
13267539-13267642,13268085-13268408,13269090-13269605
Length = 482
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 581 RPSVPLYENKCMPTLGERRP 640
+P V LY +KC +LG RRP
Sbjct: 76 QPCVGLYSDKCTSSLGRRRP 95
>01_06_0507 - 29893563-29894470,29895227-29895419
Length = 366
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/79 (24%), Positives = 27/79 (34%)
Frame = +1
Query: 445 LTPEQLARNGFYYLGRGDEVCCAFCKVEIMRWVEGDDPAADHRRWAPQCPFVRKQMYANA 624
LTP R G G G+E ++ W H+R PF R+ +
Sbjct: 69 LTPGDGGRQGSRRAGSGEEAATVARAAQLRSWATRSGACERHQRRLR--PFARRPVRMAT 126
Query: 625 GGEATAVGRDECGASAATQ 681
G+ TAV G +
Sbjct: 127 RGKLTAVAEQARGGGGTAE 145
>11_01_0687 -
5651002-5651453,5651535-5651951,5652621-5653338,
5654106-5654417,5654482-5654814
Length = 743
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/55 (29%), Positives = 19/55 (34%)
Frame = +1
Query: 538 WVEGDDPAADHRRWAPQCPFVRKQMYANAGGEATAVGRDECGASAATQPPRMPGP 702
W E D D R P ++ T VG A AA PP+ P P
Sbjct: 209 WWEDKDQKKDGARVFKDSPLKHIDLHCAIFSGRTVVGNHSAVAGAAPAPPQQPTP 263
>10_08_0095 +
14760292-14760624,14760689-14761000,14761768-14762489,
14762905-14763187,14763419-14763650,14763736-14764187
Length = 777
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/55 (29%), Positives = 19/55 (34%)
Frame = +1
Query: 538 WVEGDDPAADHRRWAPQCPFVRKQMYANAGGEATAVGRDECGASAATQPPRMPGP 702
W E D D R P ++ T VG A AA PP+ P P
Sbjct: 209 WWEDKDQKKDGARVFKDSPLKHINLHCAIFSGCTVVGNHSAIAGAAPAPPQQPTP 263
>07_03_1782 +
29477748-29478169,29478257-29478413,29478518-29478610,
29478753-29478938,29479107-29479187,29479788-29479925,
29480044-29480208
Length = 413
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 504 HLVAATEVVESVAGQLFRRQKRNGP 430
HL+ ATE + V G+ +R ++GP
Sbjct: 355 HLIEATEAAKGVMGKYYREPDKSGP 379
>04_01_0222 -
2805329-2805780,2805866-2806611,2806730-2806778,
2807031-2807748,2808513-2808824
Length = 758
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/55 (29%), Positives = 19/55 (34%)
Frame = +1
Query: 538 WVEGDDPAADHRRWAPQCPFVRKQMYANAGGEATAVGRDECGASAATQPPRMPGP 702
W E D D R P ++ T VG A AA PP+ P P
Sbjct: 98 WWEDKDQKKDGARVFKDSPLKHIDLHCAIFSGRTVVGNHSAVAGAAPAPPQQPTP 152
>03_05_0361 -
23448459-23448910,23448990-23449406,23449542-23449735,
23449854-23449902,23450155-23450539,23450578-23450874,
23451650-23451961
Length = 701
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/55 (29%), Positives = 19/55 (34%)
Frame = +1
Query: 538 WVEGDDPAADHRRWAPQCPFVRKQMYANAGGEATAVGRDECGASAATQPPRMPGP 702
W E D D R P ++ T VG A AA PP+ P P
Sbjct: 98 WWEDKDQKKDGARVFKDSPLKHIDLHCAIFSGRTVVGNHSAVAGAAPAPPQQPTP 152
>01_06_0282 -
28160321-28160417,28160585-28160653,28161090-28161145,
28161650-28161741,28162314-28162398,28162512-28162628,
28162766-28162798,28163109-28163199,28163908-28163967,
28164115-28164180,28165238-28165430,28165665-28165821
Length = 371
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = +1
Query: 571 RRWAPQCPFVRKQMYANAGGEATAVGRDECGASAATQPPRMP---GPVHAR 714
RRW P P + GG+ D C +S +PP +P P+H R
Sbjct: 5 RRWYP--PSSTAAQPSPDGGDVNTDDADACPSSRQQRPPSLPQHSAPIHHR 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,404,713
Number of Sequences: 37544
Number of extensions: 419731
Number of successful extensions: 1250
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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