Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3l22
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 30 0.38
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 29 0.88
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 28 1.2
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c... 28 1.2
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 27 2.0
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 27 2.0
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 27 2.0
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 26 4.7
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 26 6.2
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 25 8.2
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 25 8.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 8.2
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 29.9 bits (64), Expect = 0.38
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 632 SIAISSNGIVPINMPDFSPSNNAFDYSD 715
S+ I+ +P+++P +SP N+FD SD
Sbjct: 265 SVVITDENYLPVSLPVYSPVLNSFDDSD 292
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 28.7 bits (61), Expect = 0.88
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +2
Query: 239 ILSLKRIFCIFXYRKQPARYVINLPHEEIDNLYNKLNWERTRRL 370
++S +F Y +YV+ L +E++N+Y N + +R+
Sbjct: 320 VISTLESLSVFKYDPLKKKYVLQLKRDELENVYKAWNIKHPQRV 363
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 329 NLYNKLNWERTRRLMKGDVPSNCATVNRSSLKYIKQAQSL 448
NL+ K ++ + RRL D PS T N + QA +
Sbjct: 580 NLFRKNSFPKRRRLSNSDTPSETTTPNNEQEQVSNQANKV 619
>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 217 GNVHHGEDIVVETHFLHLSISQTARAL 297
GN+HH D ET +HL+IS A A+
Sbjct: 195 GNLHHAGDHEEETVHIHLTISLFASAI 221
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = -2
Query: 442 LCLFNVFETGAVYCSAIGWHVALHKPARSLPIQFVVQIINFLVRQIDYIARGL 284
+CLF + G +YCS I V P S+ I VV II + +I YI L
Sbjct: 128 ICLFVLLLLGLIYCSKI---VVKAIPLISIVIAAVVVIIAVAMVKILYICHWL 177
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = -2
Query: 442 LCLFNVFETGAVYCSAIGWHVALHKPARSLPIQFVVQIINFLVRQIDYIARGL 284
+CLF + G +YCS I V P S+ I VV II + +I YI L
Sbjct: 128 ICLFILLLLGLIYCSKI---VVKAIPLISIVIAAVVVIIAVAMVKILYICHWL 177
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = -2
Query: 442 LCLFNVFETGAVYCSAIGWHVALHKPARSLPIQFVVQIINFLVRQIDYIARGL 284
+CLF + G +YCS I V P S+ I VV II + +I YI L
Sbjct: 128 ICLFVLLLLGLIYCSKI---VVKAIPLISIVIAAVVVIIAVAMVKILYICHWL 177
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 197 FLLCFXLETSTMVKILSLK-RIFCIF 271
FLL F L T+ ++ILSL FC+F
Sbjct: 23 FLLTFFLLTTCQLRILSLSINAFCVF 48
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 128 SNLRPIACEIPLSHFKELVESNDFLLCFXLET 223
+NL + CEIP+ F+ VE + LL F ET
Sbjct: 920 ANLIELICEIPVCMFEPTVELSPILL-FQYET 950
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 599 YKKIRLFCKNDSIAISSNGIVPINMPDFSPSNNAFDYSD 715
Y+K F +DS A+ SN ++ + + SNN+ D+ D
Sbjct: 259 YRKNCHFEVHDSDALLSNQLLSADKHQLAASNNSQDFED 297
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 8.2
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 545 KLNNFDQI-MSVAPNKAESYKKIRLFCKNDSIAISSN 652
KL+ FD+I S AP +K R FCK + I +SSN
Sbjct: 319 KLHYFDEIGYSHAP-LLHCPRKGRCFCKPEEIDLSSN 354
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 96 ATVKAFRLQ*KAICDRLLVKFRCLILKSWWKAMTFYYVSIWKRPPW 233
+T+ AF L + D +L+ F +L SW +++SI + PW
Sbjct: 212 STIGAFDLDPNKVLDLILLLFSENLLDSW-----RFFLSILRNSPW 252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,361
Number of Sequences: 5004
Number of extensions: 64229
Number of successful extensions: 192
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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