Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3l22
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0258 - 1709672-1709752,1710277-1710460,1710627-1710841,171...    31   0.69 
12_02_0439 + 19096711-19096713,19096819-19096893,19097037-190971...    28   6.4  
07_03_1438 - 26552160-26552291,26552430-26552535,26552772-26553283     28   8.5  

>02_01_0258 -
           1709672-1709752,1710277-1710460,1710627-1710841,
           1711321-1711390,1711525-1711607,1711720-1711884,
           1712068-1712172,1713021-1713140,1713620-1713718,
           1713790-1713885,1714367-1714480,1715265-1715372,
           1716200-1716264,1716430-1716609,1716747-1717397,
           1717497-1717565,1717639-1717858
          Length = 874

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
 Frame = +2

Query: 488 VKMFQKIIFPYQL-VPN-----VIIKLNNFDQIMSVAPNKAESYKKIRLFCKNDSIAIS 646
           V  F  IIF Y   +PN     VI+  N + +   VAP+ + S K I + CK+  I+++
Sbjct: 377 VGKFSSIIFEYASNIPNIAVEDVIVSFNRWHEQFEVAPSISASEKIISVCCKSSKISLA 435


>12_02_0439 +
           19096711-19096713,19096819-19096893,19097037-19097111,
           19097225-19097297,19097536-19097580,19098217-19098328,
           19098794-19098866,19099178-19099222,19100216-19100271,
           19100370-19100545,19101289-19101476
          Length = 306

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 23  PKCPIEFTYPETDMQSAXSALLKNRNGQSVPPPIKSNLRPIACEI 157
           P C I   +  +D +S     +KN NG++V  P+  +L  I+ E+
Sbjct: 10  PPCDISIAF--SDARSRKQIAVKNDNGRTVMVPVFQSLETISGEV 52


>07_03_1438 - 26552160-26552291,26552430-26552535,26552772-26553283
          Length = 249

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 560 DQIMSVAPNKAESYKKIRLFCKNDSIAISSNG 655
           D+++S   NK   YKKIR     DSI  S +G
Sbjct: 197 DEVISFVQNKVAPYKKIRKVVFVDSIPRSPSG 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,408,695
Number of Sequences: 37544
Number of extensions: 394274
Number of successful extensions: 983
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)