Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3l22
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-1|CAA83608.1|  761|Caenorhabditis elegans Hypothetical pr...    31   0.82 
AL032626-21|CAD45606.2|  433|Caenorhabditis elegans Hypothetical...    30   1.4  
AL032626-20|CAD45605.1|  445|Caenorhabditis elegans Hypothetical...    30   1.4  
AL032626-19|CAA21537.1|  508|Caenorhabditis elegans Hypothetical...    30   1.4  
AF109378-1|AAD19958.1|  508|Caenorhabditis elegans glutamic acid...    30   1.4  
Z81070-2|CAB03007.1|  491|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U29382-1|AAG00006.1|  382|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF106573-1|AAC78152.2|  336|Caenorhabditis elegans Hypothetical ...    28   5.8  
AC024836-1|AAK39347.2|  475|Caenorhabditis elegans Hypothetical ...    28   5.8  
AC006769-11|AAF60586.1|  340|Caenorhabditis elegans Seven tm rec...    28   5.8  
AC006645-4|AAF39845.2|  340|Caenorhabditis elegans Seven tm rece...    28   5.8  

>Z32681-1|CAA83608.1|  761|Caenorhabditis elegans Hypothetical
           protein F56F3.1 protein.
          Length = 761

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 47  YPETDMQSAXSALLKNRNGQSVPPPIKSNLR 139
           Y E  +Q A +A ++  NGQ +PP +   LR
Sbjct: 476 YVENQLQEAVNAAIRANNGQQLPPQLHEQLR 506


>AL032626-21|CAD45606.2|  433|Caenorhabditis elegans Hypothetical
           protein Y37D8A.23c protein.
          Length = 433

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 350 WERTRRLMKGDVPSNCATVNRSSLKYIKQAQSLLGI-PDY 466
           W R++ L   D+P+ C   +  S   IK A ++LGI  DY
Sbjct: 108 WPRSKHLGMKDIPTLCCFTSEDSHYSIKSASAVLGIGADY 147


>AL032626-20|CAD45605.1|  445|Caenorhabditis elegans Hypothetical
           protein Y37D8A.23b protein.
          Length = 445

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 350 WERTRRLMKGDVPSNCATVNRSSLKYIKQAQSLLGI-PDY 466
           W R++ L   D+P+ C   +  S   IK A ++LGI  DY
Sbjct: 183 WPRSKHLGMKDIPTLCCFTSEDSHYSIKSASAVLGIGADY 222


>AL032626-19|CAA21537.1|  508|Caenorhabditis elegans Hypothetical
           protein Y37D8A.23a protein.
          Length = 508

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 350 WERTRRLMKGDVPSNCATVNRSSLKYIKQAQSLLGI-PDY 466
           W R++ L   D+P+ C   +  S   IK A ++LGI  DY
Sbjct: 183 WPRSKHLGMKDIPTLCCFTSEDSHYSIKSASAVLGIGADY 222


>AF109378-1|AAD19958.1|  508|Caenorhabditis elegans glutamic acid
           decarboxylase protein.
          Length = 508

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 350 WERTRRLMKGDVPSNCATVNRSSLKYIKQAQSLLGI-PDY 466
           W R++ L   D+P+ C   +  S   IK A ++LGI  DY
Sbjct: 183 WPRSKHLGMKDIPTLCCFTSEDSHYSIKSASAVLGIGADY 222


>Z81070-2|CAB03007.1|  491|Caenorhabditis elegans Hypothetical
           protein F26E4.3 protein.
          Length = 491

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -1

Query: 281 CDXERCKKCVSTTISSPWWTFPDXNIIKSHCFP 183
           C+  R K C    +   WW      ++  HC+P
Sbjct: 282 CNQHRQKGCEGGYLDRAWWYIRKLGVVGDHCYP 314


>U29382-1|AAG00006.1|  382|Caenorhabditis elegans Hypothetical
           protein R03H10.2 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 634 AVVFAKQPNFFVGLCFIWRNRHYLVKVVQFYD-YVGHQLIGENYFLEHFDKVHNRLAIVG 458
           A+  A   +  V LC++W+++     +V F D  +    I E  FL  +      L ++G
Sbjct: 49  ALALAVAISSLVLLCYVWKDKQVYDHIVDFLDKTIQISKIAERPFLGVYQLSEKELEVLG 108

Query: 457 N 455
           N
Sbjct: 109 N 109


>AF106573-1|AAC78152.2|  336|Caenorhabditis elegans Hypothetical
           protein F52D2.1 protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +2

Query: 392 NCATVNRSSLKYIKQAQSLLGIPDYSQTVVDFVKMFQKIIFPYQLVPNVIIKLNNF 559
           N   V    LK++ +  S LGI +Y++   + +K F   + P +  P   +++ NF
Sbjct: 122 NFMDVGFKDLKFLLKHVSTLGIYNYAKNRKEIIKSFIDFLKPEECFPVDAVEIWNF 177


>AC024836-1|AAK39347.2|  475|Caenorhabditis elegans Hypothetical
           protein Y59E1A.1 protein.
          Length = 475

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +2

Query: 392 NCATVNRSSLKYIKQAQSLLGIPDYSQTVVDFVKMFQKIIFPYQLVPNVIIKLNNF 559
           N   V    LK++ +  S LGI +Y++   + +K F   + P +  P   +++ NF
Sbjct: 122 NFMDVGFKDLKFLLKHVSTLGIYNYAKNRKEIIKSFIDFLKPEECFPVDAVEIWNF 177


>AC006769-11|AAF60586.1|  340|Caenorhabditis elegans Seven tm
           receptor protein 154 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +2

Query: 494 MFQKIIFPYQLVPNVIIKLNNFDQIMSVAPNKAESYKKIRLFCKNDSIAISS 649
           + + I  P   V +V++       +++ +P K  SYK + ++C   SIA ++
Sbjct: 6   LIKSITQPIAAVLSVVVNFILITLVVTSSPRKMGSYKYLLIYCSGLSIAYAA 57


>AC006645-4|AAF39845.2|  340|Caenorhabditis elegans Seven tm
           receptor protein 267 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +2

Query: 494 MFQKIIFPYQLVPNVIIKLNNFDQIMSVAPNKAESYKKIRLFCKNDSIAISS 649
           + + I  P   V +V++       +++ +P K  SYK + ++C   SIA ++
Sbjct: 6   LIKSITQPIAAVLSVVVNFILITLVVTSSPRKMGSYKYLLIYCSGLSIAYAA 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,040,033
Number of Sequences: 27780
Number of extensions: 368011
Number of successful extensions: 882
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)