Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3l21
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...   118   3e-28
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...   117   6e-28
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    27   0.86 
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   4.6  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    24   6.1  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   6.1  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    24   8.0  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score =  118 bits (284), Expect = 3e-28
 Identities = 51/84 (60%), Positives = 59/84 (70%)
 Frame = +3

Query: 27  MTKGTSSFGKRRNKTHTLCXRCGRSSYHIQKSKCAXCGYPAAKLRSYHWSVKAXXXXXXX 206
           MTKGT SFG R NK+HT+C RCG+ S+HIQKS CA CGYPAAK RSY+W  KA       
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 207 XXXMRHLKIVRRRFRNGFKEGKPT 278
              M +LK V R F+NGF+ GKPT
Sbjct: 61  TGRMSYLKKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score =  117 bits (281), Expect = 6e-28
 Identities = 52/91 (57%), Positives = 60/91 (65%)
 Frame = +3

Query: 27  MTKGTSSFGKRRNKTHTLCXRCGRSSYHIQKSKCAXCGYPAAKLRSYHWSVKAXXXXXXX 206
           MTKGT SFG R NK+HT+C RCG+ S+HIQKS CA CGYPAAK RSY+W  KA       
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 207 XXXMRHLKIVRRRFRNGFKEGKPTPPKKAVA 299
              M +LK V R F+NGF+ GKP     A A
Sbjct: 61  TGRMSYLKKVHRSFKNGFRSGKPAAAVAASA 91


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 0.86
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 235 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPXWAHF 122
           T+F   +  +PV+ +   FT+ W   N A  +P  A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -1

Query: 126 ILIFECDMTIYHIXCITYGSYFGAYRSLRYPSSS 25
           +LI+ CD  +++  CI + S +  + S++    S
Sbjct: 211 VLIWLCDSFVFYSCCIVFISSYSIFLSVKESKES 244


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 54   KRRNKTHTLCXRCGRSSYHIQKSKCAXCGYP 146
            KR N    L  R       +Q ++C  CG P
Sbjct: 1632 KRTNDWKELSVRLREDELRVQTARCMDCGTP 1662


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 335 IFIYLAHIDS*RSYSLLGRRWFPFFKT---ITEAP 240
           IFIYL+  +    Y +L  R F  +KT   IT+ P
Sbjct: 17  IFIYLSVANKIMFYCILNERAFKHYKTYRRITDCP 51


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +2

Query: 131 PXWISCSKITILPLVSEG*AQEDYW 205
           P W+SC+++ +L    +    +D W
Sbjct: 272 PTWLSCARLPLLKAFKDVIGLKDVW 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,311,469
Number of Sequences: 5004
Number of extensions: 22634
Number of successful extensions: 46
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)