Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3l16
(505 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 27 1.6
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch... 27 2.1
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom... 26 2.8
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 2.8
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 26 2.8
SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 26 2.8
SPBC1685.13 |||non classical export pathway protein |Schizosacch... 25 4.9
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar... 25 6.5
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 25 6.5
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 25 6.5
SPCC1494.02c |taf13||transcription factor TFIID complex subunit ... 25 8.5
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 8.5
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 25 8.5
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 27.1 bits (57), Expect = 1.6
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -2
Query: 309 LVLLSWKWFSNSSFITSFLIVLFTL 235
+++ ++WF+N SFIT ++ + F L
Sbjct: 52 VIVKFYRWFNNLSFITRWITIWFPL 76
>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
Spo14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +2
Query: 41 RIQYLHNFVL----YLLDLLYPDTIIVTLILFFNFIRTVFCFKIFRN 169
R+ + FVL + L LL+PD + + FF+FI +F RN
Sbjct: 346 RLSLMFPFVLAILYFYLQLLFPDEKLDAIHRFFSFILHIFSKYTIRN 392
>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 26.2 bits (55), Expect = 2.8
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 182 MARNIKDNNNIDPATLLSNVKSTIKKDVIKELLEN-HFQESKTKI 313
++R N + + + T+ ++V KEL+EN HF E T I
Sbjct: 26 LSREYHKNGPYNHVVIRPLINDTLLRNVRKELMENIHFTEKVTDI 70
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 26.2 bits (55), Expect = 2.8
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -2
Query: 321 CGAILVLLSWKWFSNSS--FITSFLIVLFTLDNKV 223
C A+LV++S W + + F+TSFL+ T+ K+
Sbjct: 434 CLALLVMVSLLWATEAIPLFVTSFLVPFMTVFLKI 468
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 2.8
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Frame = +2
Query: 209 NIDPATLLSNVKSTIKKDVIKELLE-NHFQESKTKIAPHALMLLADVAKCL----VTETC 373
N D L N KS + + LL NHF ++ +K +PH +L V T
Sbjct: 117 NKDVRRLQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPHEALLTTTFQNMFPPISVQHTN 176
Query: 374 LRAVKQA---QREGSNKVDVEH 430
+ +VK+ R +D+ H
Sbjct: 177 INSVKRVLLLNRRDDGYIDLRH 198
>SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 26.2 bits (55), Expect = 2.8
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +2
Query: 242 KSTIKKDVIKELLENHFQESKTKIAPHALMLLADVAKCLVTETCLRAVKQAQREGSNK 415
K T+ + + ELLE Q +K P + +L D LVT + V A GS+K
Sbjct: 54 KLTVGLNSVNELLERCCQNAKDVTQPAVVFILHDQDSMLVTH-MPQLVANANFYGSSK 110
>SPBC1685.13 |||non classical export pathway protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 183
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = -2
Query: 333 NIRACGAILVLLSWKWFSNSSFITSFLIVLFTLDN 229
++R C + L + WF ++ SF++ +F N
Sbjct: 120 SMRRCQELKALCFFLWFMFGLYVASFIVQIFIAKN 154
>SPAC24C9.09 |||mitochondrial threonine-tRNA
ligase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 345 WPNVWSPRHACVQSNKHRERVLT 413
WP SPRHA + +R+LT
Sbjct: 352 WPFWLSPRHAVILPVNQTDRILT 374
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.0 bits (52), Expect = 6.5
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = -2
Query: 450 WGKHFSICSTSTLLEPSLCACLTARRHVSVTRHLATSANNIRACGAILVLLSWKWFSNSS 271
WG H C+ LL+PS R V L SAN + + ++ WF S
Sbjct: 462 WGYHIYACAVIGLLDPSWLVNDNIR---YVNALLRDSANPSESDTYFAMFRNFDWFVGHS 518
Query: 270 FIT 262
+ T
Sbjct: 519 WAT 521
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +2
Query: 200 DNNNIDPATLLSNVKSTIKKDVIKELLENHFQESKTKIA 316
DNN++ P T L+ + KD+++ + + F +T+ +
Sbjct: 619 DNNSVPPLTDLAFSAAKCFKDILRAIEDAEFSVQRTQFS 657
>SPCC1494.02c |taf13||transcription factor TFIID complex subunit
Taf13|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 314 APHALMLLADVAKCLVTETCLRAVKQAQREGSNKVD 421
AP ++ +L ++ + E CL A + A KVD
Sbjct: 36 APDSINVLEEIVVDYINEMCLEAARIAGNRNKVKVD 71
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 24.6 bits (51), Expect = 8.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 191 NIKDNNNIDPATLLSNVKSTIKKDVIKEL 277
N D+N + LSN++S I D++ L
Sbjct: 1020 NTVDDNKVSSVEALSNIQSAIVADLLTSL 1048
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 24.6 bits (51), Expect = 8.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 470 KGSPASAGVNISQYVLHQLC 411
+ SP + +N+SQ LHQ C
Sbjct: 434 EASPRAKSLNLSQVSLHQAC 453
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,505
Number of Sequences: 5004
Number of extensions: 35210
Number of successful extensions: 117
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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