Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3l12
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    60   3e-10
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    29   0.45 
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    29   0.59 
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    27   1.8  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    27   1.8  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    27   3.2  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   5.5  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    26   5.5  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   7.3  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    25   9.7  

>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 9/117 (7%)
 Frame = +1

Query: 325 WADEVEIDQGVLPPPSEVVEN--GLKIVTEYKYDNDNKKVKIVRTYK---IEKRVVSKSI 489
           WAD+ +   G+  P  +  +N  G K + E++ D++ KKVK+ R  +   I +RV   ++
Sbjct: 9   WADDEDYGTGL--PSIQTFDNPDGTKTMIEFRIDDNGKKVKVTRVIRKTVITERV-QHAV 65

Query: 490 AKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQ----FITSKEESQRPDDGELXGLK 648
           A+RK W KFG  A    G +  TT+V E+V ++    + T+KEE Q  D+  L   K
Sbjct: 66  AERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQ--DEAALAAAK 120


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 361 PPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAK 495
           PP ++VV+         K   D++ + +V TY I K  V+ +IAK
Sbjct: 337 PPQADVVQACADKAISIKKSTDSRLLVVVSTYSIGKEKVAVAIAK 381


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
 Frame = +1

Query: 367 PSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSAS----- 531
           P E +E   + +++++ +   + + +  T  + +R  S   AK+K  +KF D  S     
Sbjct: 294 PDENIELSTRTLSQWRKNYVERMIALEATKYVRRRGASS--AKKKELNKFFDWESFHPLL 351

Query: 532 ----DKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELXGLKPP 654
               +K  P+  T +  +DV     TS+ E  R   GEL GL  P
Sbjct: 352 KPWIEKLKPSNNTPSEIDDVLRNIDTSEVEVGRDVQGEL-GLNIP 395


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 233 ISLADFGFAN*VCEPICTAARCLLLKNFRLPGLM 334
           I LADFG A  V EP  +  R ++   +R P L+
Sbjct: 212 IKLADFGLARPVSEPKSSLTRLVVTLWYRAPELL 245


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
 Frame = +1

Query: 334 EVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSI-AKRKTWS 510
           EVE+D+ V    + V    LKIV E KY  +  +    R   +E   +  SI   R   +
Sbjct: 106 EVELDKHVKQLQAAVDSGTLKIVDEKKYLREISQCNRTRKSFVELNALQTSIDTIRNELN 165

Query: 511 KFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDG 630
           +  D  +D      + +    D F++  +  +E ++  DG
Sbjct: 166 ELRDQLND------SESKKLSDKFVEIRSELDEVRKQQDG 199


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 334 EVEIDQGVLPPPSEVVENGLKIVTEYKY 417
           EVE++  V+ P S   EN  + V +Y Y
Sbjct: 114 EVEVNSEVVKPDSATTENENRYVNQYNY 141


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +1

Query: 367 PSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGP 546
           PS  +    K   + KY+N +  + I R       V+  S   R+ +  F D  +D+P  
Sbjct: 50  PSPTLAGMAKRTLKLKYENMDAALSINR------EVLCYSKDAREIYYNFEDEVADEPAE 103

Query: 547 NPATTN 564
            PA+T+
Sbjct: 104 APASTS 109


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 427 NKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGP 546
           NK  + +    IEK  V K  AKRK + + G     K  P
Sbjct: 172 NKSAQKLNNQPIEKSSVDKENAKRKRYVEEGTKQGQKKKP 211


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -3

Query: 352 LGQSRPHQPRKPEILQQQASSGCANGFAYSICEPEVRQGDPLSP 221
           L  SR +  R P  +  + SS     F  S     VRQ D +SP
Sbjct: 690 LRHSRSNMSRSPSPMLSRRSSTLRPSFERSASSLSVRQSDVVSP 733


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
          Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -1

Query: 66 TNNNFYIRSLTNKRRTINEK 7
          TN+  YIR+L+N++ +I+ K
Sbjct: 18 TNDRSYIRNLSNRKTSISRK 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,846
Number of Sequences: 5004
Number of extensions: 41297
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)