Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3l12
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1015 + 33512023-33512359,33513550-33514082                       59   3e-09
02_05_1014 + 33510108-33510471,33510857-33511362                       46   3e-05
01_06_0798 + 32070026-32070356,32070446-32070720,32070825-320713...    29   3.3  
10_07_0111 - 12982291-12982704,12982788-12983267,12983371-129836...    29   4.3  
03_04_0145 + 17683681-17683982,17686058-17686145                       29   4.3  
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620...    28   5.7  
12_01_0024 + 178539-179418,179593-179938,180127-180244                 28   7.6  

>02_05_1015 + 33512023-33512359,33513550-33514082
          Length = 289

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
 Frame = +1

Query: 325 WADEVEIDQG----VLPPP--SEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRV---V 477
           W +  E D+G    +LPP   S   ENG K V EY++D+   KVK+ RT+++ K     +
Sbjct: 12  WGELEEDDEGDLDFLLPPRVVSGPDENGFKKVVEYRFDDKGNKVKVTRTFRVRKIARARL 71

Query: 478 SKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDV 579
           SKS  +R++W KFGD+  +  G      +  E V
Sbjct: 72  SKSAIERRSWPKFGDAVQEDVGARLTMVSTEEIV 105


>02_05_1014 + 33510108-33510471,33510857-33511362
          Length = 289

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
 Frame = +1

Query: 364 PPSEVV---ENGLKIVTEYKYDNDNKKVKIVRTYKIEKRV---VSKSIAKRKTWSKFGDS 525
           PP  V+   ENG+K   EY+ + + K V++  T ++ +     V+K  A+R+ W+KFGD+
Sbjct: 36  PPRVVIGPDENGIKKTVEYRLNEEGKAVRVTTTTRVREVARTRVTKRAAERRGWAKFGDA 95

Query: 526 ASDKPGPNPATTNVAEDVFMQ 588
           A +       T    E++ ++
Sbjct: 96  AHNDDAGARLTVVSPEEIVLE 116


>01_06_0798 +
           32070026-32070356,32070446-32070720,32070825-32071304,
           32071387-32071800
          Length = 499

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 382 QPLQKVVEVXLGQSRPHQP-RKPEILQQQASSGCANGFAYSICEPEVRQ 239
           QP   + E   GQ +  +  ++ +  Q Q  SGC+NG   + C   VRQ
Sbjct: 271 QPYASLQEQEQGQVQSRERYQEGQYQQSQYGSGCSNGLDETFCTLRVRQ 319


>10_07_0111 -
           12982291-12982704,12982788-12983267,12983371-12983645,
           12983735-12984065
          Length = 499

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -3

Query: 382 QPLQKVVEVXLGQ--SRPHQPRKPEILQQQASSGCANGFAYSICEPEVRQ 239
           QP   + E   GQ  SR H  ++    Q Q  SGC NG   + C   VRQ
Sbjct: 271 QPYASLQEQEQGQMQSREHY-QEGGYQQSQYGSGCPNGLDETFCTMRVRQ 319


>03_04_0145 + 17683681-17683982,17686058-17686145
          Length = 129

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -3

Query: 265 SICEPEVRQGDPLSPML 215
           S C+  VRQGDPLSP+L
Sbjct: 100 SRCKRGVRQGDPLSPLL 116


>01_07_0248 +
           42261373-42261609,42261733-42261905,42261986-42262058,
           42262148-42262282,42262352-42262562,42262886-42263034,
           42263169-42263267,42263821-42263989,42264176-42264308,
           42264600-42264694,42264774-42264882,42265136-42265295,
           42265433-42265594,42265814-42265985,42266254-42266402,
           42266914-42266951,42267779-42267839,42267913-42268155,
           42268233-42268315,42269521-42269609,42270449-42270495,
           42270576-42270656,42270737-42270899,42271077-42271267,
           42271691-42271762
          Length = 1097

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = +1

Query: 310 EFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKV-KIVRTYKIEKRVVSKS 486
           E +A+WA      Q VL P   +    LK       D    +V  + + YKI +R + KS
Sbjct: 704 EAEAAWAQREWTIQHVLFPSMRLF---LKPPKSMATDGTFVQVASLEKLYKIFERSLQKS 760

Query: 487 IAKRKTWSKFGDSASDKPGPNPA 555
             K  T + F +S    P  NP+
Sbjct: 761 KRKANTPTNFLESLQTTPDQNPS 783


>12_01_0024 + 178539-179418,179593-179938,180127-180244
          Length = 447

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 259 CEPEVRQGDPLSPML 215
           C   VRQGDPLSP+L
Sbjct: 22  CRRGVRQGDPLSPLL 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,059,282
Number of Sequences: 37544
Number of extensions: 270739
Number of successful extensions: 802
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)