Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3l12
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.1  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    24   1.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.4  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   7.9  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   7.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -3

Query: 523 NLQICSKFYVWQYSLKQHVFQFCMS*QFSLSCYH 422
           +L+  S  +V   ++   +  FCMS    ++CY+
Sbjct: 82  SLRTPSNLFVINLAISNFLMMFCMSPPMVINCYY 115


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -3

Query: 523 NLQICSKFYVWQYSLKQHVFQFCMS*QFSLSCYH 422
           +L+  S  +V   ++   +  FCMS    ++CY+
Sbjct: 48  SLRTPSNLFVINLAISDFLMMFCMSPPMVINCYY 81


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 349 QGVLPPPSEVVENGLKIVTEYKY 417
           QGV    S  + N LK++ E+KY
Sbjct: 15  QGVTDIHSRNLTNSLKVIYEWKY 37


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 189 TKNVLQNRSNIGDKGSPWRTSGSQIEY 269
           +K++ +   N  D GS W T  +  E+
Sbjct: 308 SKSITEPPKNCADSGSIWETGKNLFEF 334


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 279 MGSHTQFANPKSAKEILCXRCCCGSG 202
           +G+H +  N  S     C   CCG G
Sbjct: 96  LGTHGRQCNDTSIGVDGCDLMCCGRG 121


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 279 MGSHTQFANPKSAKEILCXRCCCGSG 202
           +G+H +  N  S     C   CCG G
Sbjct: 97  LGTHGRQCNDTSIGVDGCDLMCCGRG 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,860
Number of Sequences: 438
Number of extensions: 2699
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)