Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3k20
         (414 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    29   0.22 
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.29 
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    27   1.2  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   2.0  
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce...    26   2.7  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   4.7  

>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 29.5 bits (63), Expect = 0.22
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 240 NFEI-NVFGKSLLLSKFVNFCIANSDGVTI 326
           NF++  +FGK + L + +N+C AN  GV I
Sbjct: 179 NFKVAKLFGKHIRLEEHINYCKANKIGVGI 208


>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 29.1 bits (62), Expect = 0.29
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 180 LLFKNNLNLMVACNLINTL-INFEINVFGKS-LLLSKFVN 293
           LLFKN+L L+ AC  +NT      IN+     L+L +F N
Sbjct: 156 LLFKNSLVLLAACYFMNTTPSRLVINLIRSGYLILKRFAN 195


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 301 MQKLTNLLSNKLLPNTLISKLINVLIKL 218
           ++ LTN LS   LP++LIS  I +L KL
Sbjct: 385 LKSLTNSLSTMALPDSLISLHIELLRKL 412


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 198 LNLMVACNLINTLINFEINVFGKSLLLSKFVNF 296
           +N+ V+  L+NTLI  +I  FG ++ + + + F
Sbjct: 183 VNICVSAKLVNTLIIEQIKFFGVNIGIGRAILF 215


>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 310 LLAMQKLTNLLSNKLLPNTLISKLINVLIKLH 215
           LLA Q  T L+SNK L   L  +L   L  +H
Sbjct: 204 LLAEQAETELISNKRLSTKLPGRLQRALASIH 235


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 15/46 (32%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
 Frame = +3

Query: 237 INFEINVFGKSLLLSKF-VNFCIANSDGV--TIQHKMLTNVLSFLL 365
           INFEI++  K+  L+KF V+  + +++ +   +Q+K+  N++S +L
Sbjct: 775 INFEISILQKATNLTKFKVSSHMKHAEIMFSDVQYKVFINMMSNIL 820


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,280,717
Number of Sequences: 5004
Number of extensions: 20337
Number of successful extensions: 42
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)