Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3k20
         (414 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929...    32   0.16 
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510...    29   1.1  
10_06_0191 - 11631066-11631538,11632011-11632319,11632374-11632572     29   1.9  
06_01_0078 - 628946-629524,629620-629684,629814-629935,630042-63...    28   2.6  
11_05_0041 - 18545731-18545745,18545770-18545919                       27   7.8  
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910...    27   7.8  
01_01_0078 + 587975-588179,588506-588606,589087-589167,589240-59...    27   7.8  

>01_01_1166 +
           9287840-9288040,9289752-9289799,9292166-9292282,
           9293018-9293700,9295214-9297190,9298330-9298441,
           9299848-9299904
          Length = 1064

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -3

Query: 301 MQKLTNLLSNKLLPNTLISKLINVLIKLHATIKFKLFLKS 182
           +  L+NL+   L  N L S+L+ +L KLH+ +  KL++ S
Sbjct: 861 ISSLSNLVRLSLRENYLESELVKILGKLHSLLSLKLYVNS 900


>04_04_1696 + 35448667-35449641,35449726-35450562,35450667-35451001,
            35451371-35451497,35451594-35451752,35451872-35453053,
            35453164-35453424,35453513-35453761
          Length = 1374

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/48 (27%), Positives = 30/48 (62%)
 Frame = +3

Query: 219  NLINTLINFEINVFGKSLLLSKFVNFCIANSDGVTIQHKMLTNVLSFL 362
            +L+++L++ E++V GKS L  K+   C+  +   T++ K   + L+++
Sbjct: 1086 SLLSSLLHPEVSVNGKSSLKGKYSVICVHANQFYTLRKKCCPSELAYI 1133


>10_06_0191 - 11631066-11631538,11632011-11632319,11632374-11632572
          Length = 326

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 17/79 (21%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
 Frame = +3

Query: 177 TLLFKNNLNLMVACNLINTLINFEINVFGKSLLLSKFVNFCIANSD-----GVTIQHKML 341
           T ++++ L+++V   L+N +  +   + G +++ ++F ++C A        G+ ++H+  
Sbjct: 162 TTIYRSKLSMIVLEKLLNKICRYVRIIAGNTVVKARFQDYCKAKKKPARMFGIDVKHRWN 221

Query: 342 TNVLSFLLEKYY*K*INLF 398
           T  L     K Y + I +F
Sbjct: 222 TMYLLLRQLKGYEELIYVF 240


>06_01_0078 -
           628946-629524,629620-629684,629814-629935,630042-630129,
           630508-630819,630908-632189,632296-632784
          Length = 978

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 240 NFEINVFGKSLLLSKFVN-FCIANSDGVTIQHKMLTNVLSF 359
           N  I+V+G+   L K V  F  A   G+ I  K  TN+LSF
Sbjct: 720 NIMISVYGQGGKLEKAVEMFSAAQELGLPIDEKTYTNMLSF 760


>11_05_0041 - 18545731-18545745,18545770-18545919
          Length = 54

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 294 FCIANSDGVTIQHKMLTNVLSFLLEKY 374
           FC+ NSD +T     +  +  FL+ KY
Sbjct: 23  FCVTNSDHLTNLKDKMKKICEFLITKY 49


>03_03_0226 +
           15590276-15590469,15590515-15590539,15590865-15591014,
           15591166-15591594
          Length = 265

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +3

Query: 135 NHXSFXEYAIXFXSTLLFKNNLNLMVACNLINTLINFEINVFG--KSLLLSKFVNFCIAN 308
           +H    EYAI +   +  K  L+  V C  ++  I   ++  G     L +K  +   + 
Sbjct: 55  DHMMSNEYAIRYIRHVFTKEQLSTRVGCGRVHPTIENILDKCGVVAPNLPTKIDDLSHST 114

Query: 309 SDGVTIQHKMLTNVLSFLLE 368
             G T + K++  +L  +LE
Sbjct: 115 GHGWTTREKVIKRLLLMVLE 134


>01_01_0078 +
           587975-588179,588506-588606,589087-589167,589240-590178,
           590388-590542,590837-590902,590963-591023,591659-591853,
           591939-592049,592116-592280
          Length = 692

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +3

Query: 192 NNLNLMVACNLINTLINFEINVFGKSLLLSKFVNFCIANSDGV--TIQHKMLTNVLSFLL 365
           +++++ +    I   INFEI ++G S +  + V+  I  +  V      + LT VL FLL
Sbjct: 469 HSISVHILVEFIIARINFEIMIYGSSTM--ELVHTAITTTGAVEEVEAARSLTIVLQFLL 526

Query: 366 EKYY*K*INLFS 401
              +   + +FS
Sbjct: 527 SLVFAAPLAIFS 538


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,383,519
Number of Sequences: 37544
Number of extensions: 104428
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)