Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3k20
         (414 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-50|CAD56259.3|  837|Caenorhabditis elegans Hypothetical p...    29   1.0  
AL031635-11|CAA21038.3|  446|Caenorhabditis elegans Hypothetical...    27   5.4  
Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical pr...    26   9.4  
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr...    26   9.4  
Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical p...    26   9.4  
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr...    26   9.4  
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri...    26   9.4  
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ...    26   9.4  

>Z99281-50|CAD56259.3|  837|Caenorhabditis elegans Hypothetical
           protein Y57G11C.37 protein.
          Length = 837

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +3

Query: 147 FXEYAIXFXSTLLFKNNLNLMVACNLINTLINFEINVF 260
           F E  I F   LLF     L   C LIN LI   ++ F
Sbjct: 626 FLEMFIQFGYVLLFSPAFPLAAVCALINNLIEIRVDAF 663


>AL031635-11|CAA21038.3|  446|Caenorhabditis elegans Hypothetical
           protein Y47D3B.3 protein.
          Length = 446

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 255 VFGKSLLLSKFVNFCIANSDGVTIQHKMLTNVL 353
           +FG++ L+SK++  CI+  D   I  K+ T ++
Sbjct: 15  IFGQNFLISKYLRTCISLLDPQLIDLKLQTRMV 47


>Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical
           protein C18D4.2b protein.
          Length = 1376

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 300 IANSDGVTIQHKMLTNVLSFLLEKY 374
           I NS+G  +Q++ LTN+    +EKY
Sbjct: 154 IDNSNGNNLQNQELTNIFGDSIEKY 178


>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical
           protein C18D4.2a protein.
          Length = 1817

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 300 IANSDGVTIQHKMLTNVLSFLLEKY 374
           I NS+G  +Q++ LTN+    +EKY
Sbjct: 154 IDNSNGNNLQNQELTNIFGDSIEKY 178


>Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical
           protein C18D4.2b protein.
          Length = 1376

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 300 IANSDGVTIQHKMLTNVLSFLLEKY 374
           I NS+G  +Q++ LTN+    +EKY
Sbjct: 154 IDNSNGNNLQNQELTNIFGDSIEKY 178


>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical
           protein C18D4.2a protein.
          Length = 1817

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 300 IANSDGVTIQHKMLTNVLSFLLEKY 374
           I NS+G  +Q++ LTN+    +EKY
Sbjct: 154 IDNSNGNNLQNQELTNIFGDSIEKY 178


>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
            protein 2 protein.
          Length = 1262

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 246  EINVFGKSLLLSKFVNFCIANSDGVTIQH-KMLTNVLSF 359
            ++  +G   L++ F+N C A S  +  QH K +T +L +
Sbjct: 888  QVYYWGSKSLMAAFMNICNAYSQCIGTQHLKAITRLLHY 926


>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
            protein.
          Length = 1262

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 246  EINVFGKSLLLSKFVNFCIANSDGVTIQH-KMLTNVLSF 359
            ++  +G   L++ F+N C A S  +  QH K +T +L +
Sbjct: 888  QVYYWGSKSLMAAFMNICNAYSQCIGTQHLKAITRLLHY 926


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,019,833
Number of Sequences: 27780
Number of extensions: 112963
Number of successful extensions: 229
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)