Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3k13
         (185 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   0.75 
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    23   4.0  
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    23   7.0  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    22   9.3  

>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 0.75
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 78  DCNVVYSFCNKFLCLINSIFLFDK 7
           +C  VYS+ N  LCLI S  +F K
Sbjct: 35  NCLEVYSYENNRLCLITSANIFAK 58


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -3

Query: 66  VYSFCNKFLCLINSIFL 16
           +YS+ N F+ ++NSIF+
Sbjct: 150 LYSYENSFIVVLNSIFV 166


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
          Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 23 IELIKHKNLLQNE 61
          + L+ HKN+L+NE
Sbjct: 15 LPLVSHKNMLENE 27


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 11  SNKNIELIKHKNLLQNEYTTLQSY 82
           +N N+E++K   L  NEY T   Y
Sbjct: 506 TNMNMEMMKDILLTYNEYDTELGY 529


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 486,085
Number of Sequences: 5004
Number of extensions: 4420
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)