Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3k13
         (185 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64601-3|ABC71817.1|  485|Caenorhabditis elegans Temporarily ass...    27   2.3  
U64601-2|AAQ82847.1|  592|Caenorhabditis elegans Temporarily ass...    27   2.3  
U64601-1|AAB04573.2|  564|Caenorhabditis elegans Temporarily ass...    27   2.3  
Z81088-7|CAB03129.2|  337|Caenorhabditis elegans Hypothetical pr...    25   5.4  

>U64601-3|ABC71817.1|  485|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform c protein.
          Length = 485

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 74  VMLCTRFVINFCV*SI-QYFYLIKP 3
           V+LCT  ++N CV S+ +YF +  P
Sbjct: 74  VLLCTASILNLCVISLDRYFAITSP 98


>U64601-2|AAQ82847.1|  592|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform b protein.
          Length = 592

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 74  VMLCTRFVINFCV*SI-QYFYLIKP 3
           V+LCT  ++N CV S+ +YF +  P
Sbjct: 181 VLLCTASILNLCVISLDRYFAITSP 205


>U64601-1|AAB04573.2|  564|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform a protein.
          Length = 564

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 74  VMLCTRFVINFCV*SI-QYFYLIKP 3
           V+LCT  ++N CV S+ +YF +  P
Sbjct: 153 VLLCTASILNLCVISLDRYFAITSP 177


>Z81088-7|CAB03129.2|  337|Caenorhabditis elegans Hypothetical
           protein F53F1.7 protein.
          Length = 337

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 135 IN*LIVYITFHFNVKKK 185
           +N L+ YIT+ F +KKK
Sbjct: 202 VNNLVTYITYRFKLKKK 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,594
Number of Sequences: 27780
Number of extensions: 25359
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 219895322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)