Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3k12
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    25   4.3  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    25   5.7  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   7.5  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    24   9.9  

>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 363 QQLLIPLQREYNLHNIALIQTYIKYNF 443
           Q +L+ LQR YN +    ++    YNF
Sbjct: 556 QAMLVTLQRLYNFYRFQYLEEQSLYNF 582


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 284 ILLSATRIKQYVFFISKSHHVTYV 213
           +   A +  Q  +F S+SHHVTY+
Sbjct: 43  VCFEAIKYIQRHYFSSQSHHVTYL 66


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 388 LCKGMSNCWRFVNVT 344
           + KG++ CWR  N T
Sbjct: 191 ITKGLTQCWRLANAT 205


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = -3

Query: 282 IIIRNTHKTVCFLH-LQEP 229
           I+I N+H   C LH L EP
Sbjct: 192 IVIHNSHLATCLLHSLSEP 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,949,056
Number of Sequences: 5004
Number of extensions: 36809
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)