Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3k12
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490...    29   1.4  
01_05_0535 - 23001864-23005052                                         27   7.4  
05_04_0423 - 21126038-21126556                                         27   9.8  
02_03_0332 + 17834876-17834887,17835013-17835972                       27   9.8  

>01_05_0104 +
           18148396-18148642,18148797-18148886,18148972-18149072,
           18149174-18149287,18149381-18149462,18149592-18149659,
           18149747-18149806,18149885-18150009,18150663-18150861,
           18150942-18151073,18151152-18151244,18151360-18152244,
           18152339-18152664,18153003-18153341,18153911-18153996,
           18154054-18154139
          Length = 1010

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 97  GEVETTCEGPMYQRDTLGHQQQLQKHA*DSSRPNDRQIATYVT 225
           G+V +  E P Y+R +  + +++QK   +++  N R I  YVT
Sbjct: 671 GDVSSRDETPRYRRSSSVNMKKMQKMFQNAAEENVRNIRAYVT 713


>01_05_0535 - 23001864-23005052
          Length = 1062

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 418 INAILCKLYSLCKGMSNCWRFVNVTHEH 335
           ++  L K+Y  C  MS CW   N    H
Sbjct: 521 VSNALVKMYGECGRMSECWEIFNSMSAH 548


>05_04_0423 - 21126038-21126556
          Length = 172

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 397 LYSLCKGMSNCWRFVNVTHEHL 332
           L+  CKG+  CWR +N+    L
Sbjct: 20  LFLKCKGVKECWRSLNLEEVRL 41


>02_03_0332 + 17834876-17834887,17835013-17835972
          Length = 323

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 121 LHKLSPLHPVPMLTLFWRIFEL 56
           L  LSP H   +L LFWR + +
Sbjct: 89  LDSLSPTHKAQLLLLFWRAWHI 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,830,599
Number of Sequences: 37544
Number of extensions: 213373
Number of successful extensions: 371
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)