Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3k12
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81124-8|CAD56599.1|  426|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U50199-5|AAA91265.1|  395|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z81124-8|CAD56599.1|  426|Caenorhabditis elegans Hypothetical
           protein T21B4.14 protein.
          Length = 426

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 308 NEITLFLNILLSATRIKQYVFFISKSHHVT 219
           N +T F  +  SAT I  Y  FISKS HV+
Sbjct: 299 NALTTFQILFFSATCI--YYLFISKSSHVS 326


>U50199-5|AAA91265.1|  395|Caenorhabditis elegans Hypothetical
           protein T14F9.2 protein.
          Length = 395

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 333 RCS*VTLTNLQQLLIPLQREYNLHNIALIQTYIKYNFCCCG 455
           RCS   L  L+++   ++ E  L +I +  T+I+ N C  G
Sbjct: 49  RCSVEMLMELEEISCEIEAEQKLLDILVKVTFIERNLCLNG 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,755,274
Number of Sequences: 27780
Number of extensions: 208820
Number of successful extensions: 360
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)