Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3k11
(667 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces... 80 3e-16
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 29 0.46
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 29 0.46
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 29 0.60
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ... 27 1.8
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 27 3.2
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 27 3.2
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.2
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 26 4.2
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 26 5.6
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 26 5.6
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 25 7.4
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 25 7.4
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph... 25 7.4
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 9.8
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 25 9.8
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 9.8
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 9.8
>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 129
Score = 79.8 bits (188), Expect = 3e-16
Identities = 37/117 (31%), Positives = 61/117 (52%)
Frame = +3
Query: 114 ITDTQKIGVGLAXXXXXXXXXXXXXXXXXXXXAIGNILFISGLTCVIGIQRTFFFFFQRH 293
++D QKIGVG ++GN+L + G + G ++ FF ++
Sbjct: 3 LSDLQKIGVGTTALGFLFMIMGIFMFFDGPLLSLGNLLLVFGFFMIAGFSKSVSFFLRKD 62
Query: 294 KLKASVAFFSGITIVLLGWPMIGMIAEMYGFLLLFRGFLPSAINFLRMVPVLGSLLN 464
++ S++FFSG+ + L +P+IG E GF LF+ F P I+FLR VP +G ++
Sbjct: 63 RMLGSISFFSGLLLTLFHFPIIGFFVECLGFFNLFKVFYPLIISFLRTVPYIGPYID 119
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 29.5 bits (63), Expect = 0.46
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 305 VRRLLQWDHYSTARMAHDRDDSRDVRLLAV 394
V R L W H+ST +A+DR R V L V
Sbjct: 83 VERKLGWGHFSTVWLAYDRAAKRRVALKVV 112
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 29.5 bits (63), Expect = 0.46
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -3
Query: 350 PSEQYYSDPTEEGDGRLQLVPLEEEEKRPLDADHACQTTYEQD 222
P YY D + D ++ P + DA+HA T+ QD
Sbjct: 1755 PQRSYYYDDLFDDDTTIRNAPSFRPQMGSFDAEHAVGATFSQD 1797
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 29.1 bits (62), Expect = 0.60
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -3
Query: 410 QETSEQQQEAVHLGYHPDHGPSEQYYSDPTEEGDGRLQLVPLEEEEKRPL 261
Q+T++ +Q L DH E+Y P+ G++ L+P E+E +R +
Sbjct: 45 QQTNQIEQAESSLNAEADHSEPERYGCTPS----GKVFLLPKEQENRRSI 90
>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 339
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -2
Query: 192 TTEVLRGIEMSFRNQLGLRQSSVYPLSQAYLIINFH 85
T E +++S RN++ L+QSS+ + ++Y NFH
Sbjct: 23 TLEAELKLKLSHRNKIPLKQSSIEEIKESY---NFH 55
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 240 LTCVIGIQRTFFFFFQRHKLKASVAFFSGITIVLLGWPMI 359
+ C+IGI +F F RH L + SG+ + + M+
Sbjct: 190 INCLIGIWWSFIMFRYRHDLLQVQKYISGVVALSIVCTMV 229
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 286 WKKKKNVLWMPITHVRPLMNRILPMARR 203
W KK + W+P +V +N I P+ARR
Sbjct: 522 WHKKDDTFWVPKANV--FINFISPIARR 547
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 373 SAIIPIMGHPSSTIVIPLKK 314
S +PI HPSS+ V+P+++
Sbjct: 582 SEFVPIESHPSSSAVVPIEE 601
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 392 QQEAVHLGYHPDHGPSE 342
Q HLG+HPD PSE
Sbjct: 744 QAAFTHLGHHPDKTPSE 760
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 415 EGRKPLNNSKKPYISAIIPIMGHPSSTIVIP 323
+G+ PLN +K I +I+ PSS+++ P
Sbjct: 137 KGKTPLNEIEKEGIISILNKSASPSSSVISP 167
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 416 RRQETSEQQQEAVHLGYHPDHG 351
R + TSE Q +VH+GY + G
Sbjct: 515 RERSTSESAQSSVHMGYAGEGG 536
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 268 VLWMPITHVRPLMNRILPMARRPLSNNRSTPRNRNVIPKPAR 143
V + P++ + L R +A LSNN S+PRN K AR
Sbjct: 172 VCYAPLSSFKTLSERESHVANC-LSNNSSSPRNMTEFLKHAR 212
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 397 NNSKKPYISAIIPIMGHPSSTIVIPLKKATDAFSLC 290
+ S KP S ++ H S+ PL + D+F LC
Sbjct: 461 SKSAKPKRSERTGLLSHQSTLAPEPLSQQRDSFELC 496
>SPBC15D4.04 |gpt2|gpt,
alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
acetylglucosaminephosphotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 354 MIGMIAEMYGFLLLFRGFLPSAINFLRMVPVLGSLLNLP 470
++G++ L+LF F+P NF VP L L+ P
Sbjct: 298 VVGILGHFSKTLMLF--FIPQIFNFALSVPQLFGLVECP 334
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = -3
Query: 365 HPD--HGPSEQYYSDPTEEGD 309
HPD H PS+++Y E+GD
Sbjct: 1448 HPDISHFPSKKFYDSRLEDGD 1468
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 269 VFLLLPTAQAEGVRRLLQW 325
VFL PTA A+ V +LQW
Sbjct: 491 VFLKKPTAAADMVTNVLQW 509
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.0 bits (52), Expect = 9.8
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Frame = -1
Query: 304 AFSLCRWKKKKNVLWMPITHVRPLMNRILPMARRPLSNNR---------STPRNRNVIPK 152
+F+ C + KKN ++ +T R R ++ +R STP +P+
Sbjct: 373 SFNECASQDKKNCVFSRVTKYIKAARRASTANRVSVAKDRLSLTPSSTPSTPSPAESLPQ 432
Query: 151 PARPTPIFCVSV 116
P+ PT ++ S+
Sbjct: 433 PSNPTSVYAKSL 444
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 261 GCRSRMSDHL*TGYCQWLGDLYRTTEVLRGIE 166
G S +D G+ QW+ YR E +RG E
Sbjct: 522 GVDSWFNDTENNGHAQWVHPDYRNKEYIRGTE 553
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,994
Number of Sequences: 5004
Number of extensions: 55212
Number of successful extensions: 181
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -