Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3k11
(667 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0109 + 5671418-5671631,5675610-5675690,5676249-5676340,567... 109 3e-24
07_03_1120 + 24123822-24124318,24125877-24126006,24127334-241273... 93 1e-19
10_05_0115 - 9300918-9300972,9301299-9301396,9301476-9301556,930... 76 2e-14
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 32 0.47
07_03_1572 - 27815760-27815819,27816374-27816494,27816580-278166... 30 1.4
01_06_0909 - 32903520-32903828,32903899-32903973,32904068-329042... 29 3.3
07_03_0037 + 12709014-12709104,12709407-12709612,12710033-127100... 29 4.4
06_01_1050 + 8262033-8262165,8262262-8262391,8262486-8263026 29 4.4
01_01_0471 - 3467275-3467351,3467526-3467895,3468258-3468555,346... 29 4.4
11_06_0289 - 21969248-21973516 28 5.8
11_06_0185 + 21018045-21022307 28 5.8
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 28 5.8
03_01_0354 + 2785998-2787623 28 7.7
>03_02_0109 +
5671418-5671631,5675610-5675690,5676249-5676340,
5676433-5676513,5676594-5676691,5676872-5676953,
5677050-5677088
Length = 228
Score = 109 bits (261), Expect = 3e-24
Identities = 53/140 (37%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
Frame = +3
Query: 90 SLLLNML--EITDTQKIGVGLAXXXXXXXXXXXXXXXXXXXXAIGNILFISGLTCVIGIQ 263
SLL NM+ E+ D +KIG+GL A+GNILF+SGL IG++
Sbjct: 84 SLLNNMVSFEMNDLKKIGLGLTGFGVFFSFLGIIFFFDKGLIAMGNILFLSGLGLTIGLK 143
Query: 264 RTFFFFFQRHKLKASVAFFSGITIVLLGWPMIGMIAEMYGFLLLFRGFLPSAINFLRMVP 443
T FF + K +++F +G +VL+GWP GM+ E YGF++LF GF P+ + FL+ +P
Sbjct: 144 STMQFFTKPKNYKGTISFGAGFFLVLIGWPFFGMLLEAYGFVVLFSGFWPTLVVFLQRIP 203
Query: 444 VLGSLLNLPIIRGIVDRIAG 503
++G + P + +DR G
Sbjct: 204 IIGWIFQQPFVTSFLDRYRG 223
>07_03_1120 +
24123822-24124318,24125877-24126006,24127334-24127379,
24128364-24128455,24128550-24128630,24128735-24128832,
24128972-24129053,24129166-24129258
Length = 372
Score = 93.5 bits (222), Expect = 1e-19
Identities = 46/119 (38%), Positives = 67/119 (56%)
Frame = +3
Query: 129 KIGVGLAXXXXXXXXXXXXXXXXXXXXAIGNILFISGLTCVIGIQRTFFFFFQRHKLKAS 308
+IG+GL+ AIGNILF+SG++ IG + T FF + K S
Sbjct: 225 EIGLGLSGFGVLFSFLGIIMLFDKGFLAIGNILFVSGVSLTIGPKSTVQFFTKPKNHKGS 284
Query: 309 VAFFSGITIVLLGWPMIGMIAEMYGFLLLFRGFLPSAINFLRMVPVLGSLLNLPIIRGI 485
+AF G +VL+GWP GM+AE YGF+ LFRGF P+A +L+ P G + + P++ +
Sbjct: 285 IAFGIGFFLVLIGWPFFGMLAEAYGFVKLFRGFWPTAAVYLQKSPTFGWIFHHPLVTSV 343
>10_05_0115 -
9300918-9300972,9301299-9301396,9301476-9301556,
9301635-9301726,9301832-9301859
Length = 117
Score = 76.2 bits (179), Expect = 2e-14
Identities = 35/91 (38%), Positives = 52/91 (57%)
Frame = +3
Query: 126 QKIGVGLAXXXXXXXXXXXXXXXXXXXXAIGNILFISGLTCVIGIQRTFFFFFQRHKLKA 305
Q+IG+GL A+GNILF+SGL IG++ T FF + K
Sbjct: 9 QEIGIGLTGFGVFFSFLGIIFFFDKGLLAMGNILFLSGLGLTIGLKSTLQFFTKPKNYKG 68
Query: 306 SVAFFSGITIVLLGWPMIGMIAEMYGFLLLF 398
+++F +G+ +VL+GWP GM+ E YGF++LF
Sbjct: 69 TISFGAGLLLVLIGWPFFGMLLEAYGFIVLF 99
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 31.9 bits (69), Expect = 0.47
Identities = 20/76 (26%), Positives = 30/76 (39%)
Frame = -1
Query: 403 PLNNSKKPYISAIIPIMGHPSSTIVIPLKKATDAFSLCRWKKKKNVLWMPITHVRPLMNR 224
P++ PY S ++P PSST +P T F W V+W P+
Sbjct: 546 PISTPSSPY-SPLVPTP--PSSTTPMPFDPNTAPFPCSYWLSHPGVIWGLFGFWCPMARL 602
Query: 223 ILPMARRPLSNNRSTP 176
P A P ++ + P
Sbjct: 603 FGPTAAAPFGHDLTVP 618
>07_03_1572 -
27815760-27815819,27816374-27816494,27816580-27816620,
27816737-27816797,27817549-27817635,27817728-27817855,
27817935-27818050,27820671-27820789,27820892-27820983,
27821082-27821169,27822523-27822902
Length = 430
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +3
Query: 315 FFSGITIVLLGWPMIGMIAEMYGFLLLFRGFLPSAINFLRMVPVLGSLLNLP 470
+FSG+ + ++G ++G +E LLLF FLP +NFL VP L + P
Sbjct: 321 YFSGMALAVVG--ILGHFSET---LLLF--FLPEVLNFLCSVPQLFKFVPCP 365
>01_06_0909 -
32903520-32903828,32903899-32903973,32904068-32904235,
32904508-32904565,32904638-32904879,32905145-32905216,
32905865-32905943,32906734-32907062,32907137-32907256,
32907355-32907429,32908260-32908342,32908942-32908984,
32909271-32909429,32910203-32910281,32910685-32910755,
32910847-32910946,32911023-32911229,32911348-32911442,
32912362-32912436,32912621-32912713,32913078-32913182,
32913851-32913921,32914943-32915096,32916035-32916098,
32916717-32916800,32917543-32917589,32918352-32918411,
32918521-32918592
Length = 1062
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 473 YRKIQ*RPQNWYHP*EINGRRQE 405
YRK+Q +P NW H + NG +E
Sbjct: 467 YRKVQLKPSNWVHIPKSNGNGKE 489
>07_03_0037 +
12709014-12709104,12709407-12709612,12710033-12710097,
12710143-12710404,12711332-12711448,12711779-12712056,
12712304-12712406
Length = 373
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 539 SALESYHVPTIVSRYPIDDPSYYRKIQ*RPQN 444
S L+ Y +P R+P+ DP+ ++Q RP++
Sbjct: 316 SLLDYYPLPKRGERFPVSDPNMMPRLQPRPES 347
>06_01_1050 + 8262033-8262165,8262262-8262391,8262486-8263026
Length = 267
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 250 THVRPLMNR--ILPMARRPLSNNRSTPRNRNVIPKPARPTP 134
TH++ + + I P+ +PL R PR ++ P P P P
Sbjct: 110 THIKKKLRKMGIDPVTHQPLEPPRPPPREQDATPPPPPPPP 150
>01_01_0471 -
3467275-3467351,3467526-3467895,3468258-3468555,
3468680-3469734,3469823-3470467
Length = 814
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Frame = -1
Query: 289 RWKKKKNVLWMPITHVRPLMNRI-----LPMARRPLSNNRSTPRNRNV------IPKPAR 143
RW+ + + MP + + + LP+A ++ N + P+N V P P R
Sbjct: 268 RWRPETHTFHMPCGEITITLQDVAMILGLPIAGHAVTVNPTEPQNELVERYLGKAPPPDR 327
Query: 142 PTPIFCVSVISSIFNN 95
P P VS + + FNN
Sbjct: 328 PRPGLRVSWVRAEFNN 343
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = -3
Query: 410 QETSEQQQEAVHLGYHPDHGPSEQYYSDPTEEGDGRLQLVPLEEEEKRPLDADH 249
+E EQQQE G E+ ++ +E +GR + V EEEEK DAD+
Sbjct: 471 EERKEQQQEE-----QEKEGRKEEQ-NEVRKETEGRKEQVAGEEEEKEDHDADN 518
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = -3
Query: 410 QETSEQQQEAVHLGYHPDHGPSEQYYSDPTEEGDGRLQLVPLEEEEKRPLDADH 249
+E EQQQE G E+ ++ +E +GR + V EEEEK DAD+
Sbjct: 470 EERKEQQQEE-----QEKEGRKEEQ-NEVRKETEGRKEQVAGEEEEKEDHDADN 517
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 357 IGMIAEMYGFLLLFRGFLPSAINFLRMVPVLGSLLNLPIIRGIVDRIAGNN 509
+G + GF L+RG+LPS I +VP +G LN + + D + N
Sbjct: 192 LGSVYREEGFRALYRGWLPSVIG---VVPYVG--LNFAVYESLKDWLLQTN 237
>03_01_0354 + 2785998-2787623
Length = 541
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +3
Query: 312 AFFSGITIVLLGWPMIG---MIAEMYGFLLLFRGFLPSAINFL 431
AF G+ I W M G + +YGF F F P+A F+
Sbjct: 385 AFMLGLAIPYHHWTMPGNQVIFVFLYGFTFFFANFGPNATTFI 427
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,056,336
Number of Sequences: 37544
Number of extensions: 340176
Number of successful extensions: 1127
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -