Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3k11
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23521-7|AAC46811.2|  141|Caenorhabditis elegans Hypothetical pr...   129   2e-30
U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical pr...    33   0.14 
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr...    33   0.14 
AL033514-8|CAA22097.2|  715|Caenorhabditis elegans Hypothetical ...    31   0.97 
Z81489-2|CAB04011.2|  360|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U22832-2|AAA64509.2|  571|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81509-5|CAI79166.1|  150|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z73098-12|CAA97339.1|  452|Caenorhabditis elegans Hypothetical p...    29   3.0  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AL033512-2|CAA22074.1|  390|Caenorhabditis elegans Hypothetical ...    28   5.2  
Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical p...    28   6.8  
U40952-1|AAK68681.3|  436|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A serine...    28   6.8  

>U23521-7|AAC46811.2|  141|Caenorhabditis elegans Hypothetical
           protein F41C3.4 protein.
          Length = 141

 Score =  129 bits (311), Expect = 2e-30
 Identities = 60/130 (46%), Positives = 84/130 (64%)
 Frame = +3

Query: 111 EITDTQKIGVGLAXXXXXXXXXXXXXXXXXXXXAIGNILFISGLTCVIGIQRTFFFFFQR 290
           E++ T++IGVGL                     AIGN+LFI G+T +IG+QRT  FFF+ 
Sbjct: 5   EVSTTKQIGVGLTTFGFFFIFLGVLMFLDSALLAIGNLLFIVGITFIIGVQRTLVFFFEF 64

Query: 291 HKLKASVAFFSGITIVLLGWPMIGMIAEMYGFLLLFRGFLPSAINFLRMVPVLGSLLNLP 470
            KLK S+ FF GI +VL G+P+ GMIAE +GF++LF GFLP  +N LR +P + ++  LP
Sbjct: 65  RKLKGSILFFGGILVVLFGYPLFGMIAECWGFIVLFGGFLPGIVNLLRSIPGISTITYLP 124

Query: 471 IIRGIVDRIA 500
            IR ++DR+A
Sbjct: 125 GIRQVLDRLA 134


>U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical
           protein F32A5.2b protein.
          Length = 859

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 226 RILPMARRPLSNNRSTPRNR-NVIPKPARPTP-IFCVS 119
           R+  + RRP +N R  PR R N+I    RPTP +F V+
Sbjct: 139 RLQTVTRRPFANRRPAPRQRTNIIRPTIRPTPRVFTVT 176


>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
           protein F32A5.2a protein.
          Length = 1000

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 226 RILPMARRPLSNNRSTPRNR-NVIPKPARPTP-IFCVS 119
           R+  + RRP +N R  PR R N+I    RPTP +F V+
Sbjct: 280 RLQTVTRRPFANRRPAPRQRTNIIRPTIRPTPRVFTVT 317


>AL033514-8|CAA22097.2|  715|Caenorhabditis elegans Hypothetical
           protein Y75B8A.8 protein.
          Length = 715

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 17/75 (22%), Positives = 34/75 (45%)
 Frame = -3

Query: 494 PIDDPSYYRKIQ*RPQNWYHP*EINGRRQETSEQQQEAVHLGYHPDHGPSEQYYSDPTEE 315
           P+ +PS  +++Q   Q      ++   +Q   +QQQ   H   HP  G  E       ++
Sbjct: 253 PVSNPSSAQQMQYYQQQQQQQLQLQQNQQMQMQQQQMQQHQQQHPGMGGPEMGGHMHAQQ 312

Query: 314 GDGRLQLVPLEEEEK 270
           G    Q  P++++++
Sbjct: 313 GAPGSQAAPVQQQQQ 327


>Z81489-2|CAB04011.2|  360|Caenorhabditis elegans Hypothetical
           protein C55A1.3 protein.
          Length = 360

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +3

Query: 306 SVAFFSGITIVLLGWPM-IGMIAEMYGFLLLFRGFLPSAINFLRMVPVLGSLLNLPIIR 479
           ++ F + I ++L+  P  +G +  M+G  +LF G LP+   FL   P+L  L N  IIR
Sbjct: 263 ALVFQTLIPVILMHIPASLGFLFSMFGQSILFFGELPTFSVFL--YPILDPLPNFFIIR 319


>U22832-2|AAA64509.2|  571|Caenorhabditis elegans Hypothetical
           protein C09F5.1 protein.
          Length = 571

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 212 HWQYPVHKWSDMRDRHPEDVFLLLPTAQAEGVRR 313
           HW+YP+   S  RD++ E V   +PT  A+G  R
Sbjct: 528 HWKYPLSSESTKRDKNGEWVH-WIPTTNAQGFSR 560


>Z81509-5|CAI79166.1|  150|Caenorhabditis elegans Hypothetical
           protein F21A3.8 protein.
          Length = 150

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = -3

Query: 422 NGRRQETSEQQQEAVHLGYHPDHG--PSEQY--YSDPT--EEGDGRLQLVPLEEEEKRPL 261
           N  R+  S Q ++     YH +H   PS  +  Y DP    E D      P EEEE+ P+
Sbjct: 40  NELRRRQSHQVEDDPPASYHTEHQSTPSHTHKKYIDPEPYSEQDEHTSAAPHEEEEELPM 99

Query: 260 D 258
           +
Sbjct: 100 E 100


>Z73098-12|CAA97339.1|  452|Caenorhabditis elegans Hypothetical
           protein T21C9.12 protein.
          Length = 452

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
 Frame = -3

Query: 461 Q*RPQNWYHP*EINGRRQETS----EQQQEAVHLGYHPDHGPSEQYYS---DPTEEGDGR 303
           Q  P+N     E  G   +TS     +  + +HL    D  P  QYYS   DP +E   R
Sbjct: 356 QLNPENMLRVPEWKGNMDDTSLVDLAELLKTIHLSDAEDVRPMLQYYSQYDDPAKEFRRR 415

Query: 302 LQLVPLEEEEKRPLDADHACQTTY 231
              +  +EE+K+    D +    Y
Sbjct: 416 AVYLSQQEEQKKQQPDDSSMLKRY 439


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 181  TPRNRNVIPKPARPTPIFC 125
            TP NRNV P+ A   P FC
Sbjct: 1252 TPNNRNVFPEEATTFPSFC 1270


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 181  TPRNRNVIPKPARPTPIFC 125
            TP NRNV P+ A   P FC
Sbjct: 1252 TPNNRNVFPEEATTFPSFC 1270


>AL033512-2|CAA22074.1|  390|Caenorhabditis elegans Hypothetical
           protein Y49A3A.3 protein.
          Length = 390

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = -1

Query: 475 IIGRFSSDPKTGTILKKLMAEGRKPLNNSKKPYISAIIPIMGHPSSTIVIPLKKATDAFS 296
           ++ R   + +   ++++ +A+    LNN+KK  +  I  I+GH  ST ++P    +  F 
Sbjct: 125 VMDRLIVEQQRNELVEQNIAQN-SDLNNTKKKQLYQISSILGHIESTGLLPTCSKSCMFE 183

Query: 295 L 293
           L
Sbjct: 184 L 184


>Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical
           protein F35G12.3a protein.
          Length = 1077

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -3

Query: 323 TEEGDGRLQLVPLEEEEKRPLDADHACQTTYEQDIANG*ETFIEQQKYSE 174
           T+E D R  L   +EEEK  +D     QT  ++ I N  ++ I++Q+ ++
Sbjct: 655 TDEDDERQLLSETDEEEKYEIDEKEEIQTKKDETI-NEEDSEIDEQRMND 703


>U40952-1|AAK68681.3|  436|Caenorhabditis elegans Hypothetical
           protein C03B1.13 protein.
          Length = 436

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = -2

Query: 651 LFINFTLTRTQSSIFNILNTI*SFSFIYTKKNVSMLAFGT 532
           L++  T  R+   I N+LN+  +FS I+TKK+++   +GT
Sbjct: 392 LYLPETKGRSSEEIQNMLNST-TFSGIHTKKHINEDLYGT 430


>AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A
           serine/threonine kinase protein.
          Length = 1077

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -3

Query: 323 TEEGDGRLQLVPLEEEEKRPLDADHACQTTYEQDIANG*ETFIEQQKYSE 174
           T+E D R  L   +EEEK  +D     QT  ++ I N  ++ I++Q+ ++
Sbjct: 655 TDEDDERQLLSETDEEEKYEIDEKEEIQTKKDETI-NEEDSEIDEQRMND 703


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,250,674
Number of Sequences: 27780
Number of extensions: 306601
Number of successful extensions: 1032
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)