Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3k06
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual          51   2e-07
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    31   0.23 
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   2.1  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   5.0  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    25   8.7  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    25   8.7  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    25   8.7  

>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 231

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
 Frame = +3

Query: 240 LNERQDRHERLVKLSRDITIESKRIIFLLHSAITEESTAKVIE-EAKERFQKLIKGPIKS 416
           L E QD+ E++++LSR+ITI+SKR+IFLLH   + +      + +    F+K I   ++S
Sbjct: 12  LQEDQDKREKIIRLSREITIQSKRMIFLLHQTSSSDGFPLPKDFDRTSIFEKKIHKELES 71

Query: 417 VGLELENSPAYLHSRAVTAAFQK 485
           +  EL    A   S A T   Q+
Sbjct: 72  LKRELAGLNADKFSSACTHGLQE 94



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
 Frame = +2

Query: 530 LDYMLGLADLTGELMRRAINSISNGDSKECFHACQVVRNLYTGYLGL----FGIGKELAR 697
           +DY+LG+ D+TGE+MR  + + S    ++     + +R L+     +      +  EL +
Sbjct: 125 IDYVLGVCDMTGEIMRFLVTNGSKFSVQQLTQQVKFLRGLHKNCSEIEHLPSKVKSELQQ 184

Query: 698 KMNTTRSNVAKVESAVY 748
           K++   ++++KVE   Y
Sbjct: 185 KLSVMENSISKVEGICY 201


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +3

Query: 198 DSPILAMFKNAALKLNERQDRHERLVKLSRDITIESKRIIFLLHSAITEESTAKVIEEAK 377
           D P +      ALK N   ++    VKL+RD  +    I+   ++ I     AK I++AK
Sbjct: 61  DGPTICKGNEIALKNNITLEKVFETVKLARDAGVTIPIILMGYYNPIFSYGDAKTIQKAK 120

Query: 378 E 380
           E
Sbjct: 121 E 121


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 357 KVIEEAKERFQKLIKGPIKSVGLELENSPAYLH 455
           K  EE K++ Q L +   KSV ++L+  P Y H
Sbjct: 217 KAKEETKQKLQDLYE-EFKSVAVDLQGDPKYQH 248


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 201  SPILAMFKNAALKLNERQDRHERLVKLSR 287
            S ++  F+  +L+L E+Q R E L+K  R
Sbjct: 1408 SSLVRRFEELSLQLQEKQKRDEELIKARR 1436


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1188

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 131  TSLPSSS*HLEPVLADEGDS 72
            T+ P +S ++EPVLAD+ D+
Sbjct: 1095 TNQPGASENVEPVLADDSDA 1114


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +3

Query: 240 LNERQDRHERL-VKLSRDITIESKRIIFLLHSAITEESTAKVIEEAKERFQKLIKGPIKS 416
           + +++DR  R  V L   ++  + +I  LL S + E   +  +   + RF+   +  ++ 
Sbjct: 487 IKQQRDRFRRANVTLVNQVSAANDKIA-LLESKLEEVEKSNTLLYEQMRFRDHYQKHVEP 545

Query: 417 VGLELENSPAYLHSRAVTAAFQK 485
               L+ + AY +S +  A+F+K
Sbjct: 546 SSSHLQTAAAYENSISPFASFRK 568


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 677 IGKELARKMNTTRSNVAKVESAV 745
           +GKE+ RK+ T + +++K ES +
Sbjct: 132 VGKEVQRKLRTKQLDLSKAESII 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,301
Number of Sequences: 5004
Number of extensions: 48351
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)