Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3k06
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1144 - 9066832-9066935,9067968-9068169,9068265-9068414,906...    61   8e-10
01_06_1738 + 39570411-39571931                                         31   0.74 
06_03_1368 - 29612463-29612638,29613135-29613222,29613334-296134...    29   3.0  
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564...    29   3.0  
03_02_0943 + 12598616-12598789,12599790-12601250                       29   3.9  

>01_01_1144 -
           9066832-9066935,9067968-9068169,9068265-9068414,
           9068553-9068637,9069264-9069343,9069972-9070070
          Length = 239

 Score = 61.3 bits (142), Expect = 8e-10
 Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
 Frame = +2

Query: 443 CIFTFTGSNCSIPEA-----ESDKKRTVITMVLHLDYMLGLADLTGELMRRAINSISNGD 607
           C F  TG+  S+ E      E   K      +  LDY+LG+ADL+GELMR AI  IS+G+
Sbjct: 99  CRFCKTGTLLSLAEINDSLLELGDKSVEPLQINVLDYVLGVADLSGELMRLAIGRISDGE 158

Query: 608 SKECFHACQVVRNLY---TGYLGLFGIGKELARKMNTTRSNVAKVESAVY 748
            +   + C  VR++Y   T  + L     E+ +KM T   +V K+E+A +
Sbjct: 159 VEYAKNICAFVRDIYRELTLVVPLMDDNSEMKKKMETMLQSVVKIENACF 208



 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 27/70 (38%), Positives = 42/70 (60%)
 Frame = +3

Query: 168 AREAAASLAPDSPILAMFKNAALKLNERQDRHERLVKLSRDITIESKRIIFLLHSAITEE 347
           A  A ++ A  S + A F   A  LN   D+ ERLVK SRD+T+ SK+ IF +H  I++ 
Sbjct: 6   AATAHSASAGCSAMKAEFAKHAEYLNTLNDKRERLVKASRDLTMNSKKAIFQVH-RISKN 64

Query: 348 STAKVIEEAK 377
           +  +V+ +A+
Sbjct: 65  NKEEVLSKAE 74


>01_06_1738 + 39570411-39571931
          Length = 506

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
 Frame = +3

Query: 168 AREAAASL--APDSPILAMFKNAALKLNERQDRHERLVKLSRDITIESKRI---IFLLHS 332
           A +A ASL  A DSP+ A F N  L    R  RHE  V+   ++T  + R+   ++  + 
Sbjct: 176 ASDALASLRRAADSPLPAEFYNIILHALARLRRHEDTVRFYGEMT-STHRVHPDVYTFNI 234

Query: 333 AITEESTAKVIEEAKERFQKLIKGPIKSVGL 425
            I     A+ ++ A   FQ++ +      G+
Sbjct: 235 LINSSCRAEGVDAAMRWFQEMRRWSCSPTGV 265


>06_03_1368 -
           29612463-29612638,29613135-29613222,29613334-29613474,
           29613561-29613595,29613990-29614054,29614286-29614335,
           29614417-29614521,29614608-29614688,29614771-29614852,
           29614941-29614995,29615111-29616164,29617202-29617289,
           29617379-29617485,29617568-29617686,29617784-29617994
          Length = 818

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 198 DSPILAMFKNAALKLNERQDRHERLVKLSRDITIESKRIIFLLHSAITEESTAKVIE 368
           D P+L    NAA  +NE      + V  S ++  + KR I   HS IT + +  V++
Sbjct: 328 DGPMLQDTTNAAPNINEVGMEESQQVLTSNELEDDGKRNILPEHSDITIQPSESVLD 384


>04_03_0998 - 21555696-21556080,21556177-21556254,21556333-21556424,
            21556524-21556620,21557113-21557141,21557620-21557781,
            21557981-21558061,21558156-21558314,21558394-21558510,
            21558598-21558666,21558753-21558831,21560884-21561050,
            21561109-21561229,21561522-21561649,21562293-21562361,
            21562408-21562539,21562619-21562991,21563274-21563398,
            21563500-21563655,21563785-21564198,21564634-21564691,
            21566522-21566648,21568047-21568305,21569005-21569104,
            21569231-21569317,21569454-21569692,21569914-21569999,
            21570409-21570532,21571111-21574332
          Length = 2444

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = -1

Query: 364  ITFAVDSSVIAECNKKIILLLSIV 293
            ++ A D +++AECN K+++ LSI+
Sbjct: 1176 VSTAADIAILAECNMKLVIALSIM 1199


>03_02_0943 + 12598616-12598789,12599790-12601250
          Length = 544

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 255 DRHERLVKLSRDITIESKRIIFLLHSAITEESTAKVIEEAKERFQK 392
           D  E+  +L  D+ I+ K  + +L      EST K+I + K+R QK
Sbjct: 69  DIKEQAAQLEHDLIIKEKETLDVLKEL---ESTKKIIADLKQRIQK 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,995,156
Number of Sequences: 37544
Number of extensions: 285637
Number of successful extensions: 774
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)