Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3k06
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29244-9|AAN60507.1|  681|Caenorhabditis elegans Eps15 (endocyto...    29   3.5  
U29244-8|AAC71084.1|  751|Caenorhabditis elegans Eps15 (endocyto...    29   3.5  
AY027560-1|AAK13051.1|  796|Caenorhabditis elegans EHS-1 protein.      29   3.5  
AF024502-2|AAK77623.1|  591|Caenorhabditis elegans Hypothetical ...    28   6.1  
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie...    28   8.1  

>U29244-9|AAN60507.1|  681|Caenorhabditis elegans Eps15 (endocytosis
           protein) homologoussequence protein 1, isoform b
           protein.
          Length = 681

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 240 LNERQDRHERLVKLSRDITIESKRIIFLLHSAITEESTAKVIEEAK 377
           L ER+   E +++L  D+TI++  I  L     T EST K +E  K
Sbjct: 432 LVERKTAEEAVLQLEADMTIKNSSIKNLQVELATLESTVKQLERQK 477


>U29244-8|AAC71084.1|  751|Caenorhabditis elegans Eps15 (endocytosis
           protein) homologoussequence protein 1, isoform a
           protein.
          Length = 751

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 240 LNERQDRHERLVKLSRDITIESKRIIFLLHSAITEESTAKVIEEAK 377
           L ER+   E +++L  D+TI++  I  L     T EST K +E  K
Sbjct: 432 LVERKTAEEAVLQLEADMTIKNSSIKNLQVELATLESTVKQLERQK 477


>AY027560-1|AAK13051.1|  796|Caenorhabditis elegans EHS-1 protein.
          Length = 796

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 240 LNERQDRHERLVKLSRDITIESKRIIFLLHSAITEESTAKVIEEAK 377
           L ER+   E +++L  D+TI++  I  L     T EST K +E  K
Sbjct: 477 LVERKTAEEAVLQLEADMTIKNSSIKNLQVELATLESTVKQLERQK 522


>AF024502-2|AAK77623.1|  591|Caenorhabditis elegans Hypothetical
           protein M151.4 protein.
          Length = 591

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 28/91 (30%), Positives = 46/91 (50%)
 Frame = +3

Query: 237 KLNERQDRHERLVKLSRDITIESKRIIFLLHSAITEESTAKVIEEAKERFQKLIKGPIKS 416
           KL ++QD HE+ V+      IE  +        I+E    KV  E K+  ++L    +K+
Sbjct: 275 KLQKQQDEHEKRVEQEHKKEIEDLKGALAAEKRISEAD--KV--ELKKLTEELQSMHLKN 330

Query: 417 VGLELENSPAYLHSRAVTAAFQKLKVTKREL 509
              EL+N+    +SRA T A Q+ +V + +L
Sbjct: 331 --KELKNNVTTENSRA-TGAVQEAQVLQEKL 358


>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human
           niemann pick c disease)related protein 1 protein.
          Length = 1383

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 446 IFTFTGSNCSIPEAESDKKRTVITMVLHLDYMLG 547
           IF+F        E E+D K  ++T+V+ L +++G
Sbjct: 607 IFSFMAERSITDEIENDAKDEIVTVVIALAFLIG 640


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,356,549
Number of Sequences: 27780
Number of extensions: 265922
Number of successful extensions: 723
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)