Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3k03
         (621 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    25   0.51 
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    24   0.89 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    24   1.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.7  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 150 LSKELRQKFNVKSMPIRKDDEVQTAGVPLSREG*VEGF 263
           L KELR+ F  ++  I+K   + +A VP+  +    G+
Sbjct: 225 LLKELREAFEAEAQEIKKPALLLSAAVPVGPDNIKAGY 262


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 449 HTLKGECRHMLLHHWPFLFESS 384
           HT + +C H LL H P L + S
Sbjct: 352 HTPEPDCIHELLGHMPLLADPS 373


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/56 (23%), Positives = 28/56 (50%)
 Frame = -3

Query: 475 FIHLQLDNHTL*RVNADICCCTIGLFSLNPLNVYNKLFTIHLHHFANLLAFVVSTY 308
           F   +L+N++L  +N  +    +GL+ LN  + ++   +I      N + F V+ +
Sbjct: 316 FCKKKLENYSLQLINHRVVFTAMGLYVLNMEHFFSVKCSIQSESLLNDILFPVAGF 371


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = +3

Query: 12  SVLSRVVLAKSDRMKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSM 191
           S +S V+  K     F+     S    +  H+    HI R +  S   +   ++   KS+
Sbjct: 542 SHVSAVLTCKVCDQAFSSLKELSNHMVKNSHYK--EHIMRSITESGGRRRQTREKRKKSL 599

Query: 192 PIRKDDEVQTA 224
           P+RK  E++ A
Sbjct: 600 PVRKLLELERA 610


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 501 EQRADWLHLAKTRVNTPRKLPQPW 572
           ++ A  +H    R+  P+K+P P+
Sbjct: 645 DEAASDVHQTHMRIRPPKKIPTPY 668



 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 403 GQWCNSICRHSP 438
           G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 501 EQRADWLHLAKTRVNTPRKLPQPW 572
           ++ A  +H    R+  P+K+P P+
Sbjct: 645 DEAASDVHQTHMRIRPPKKIPTPY 668



 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 403 GQWCNSICRHSP 438
           G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 501 EQRADWLHLAKTRVNTPRKLPQPW 572
           ++ A  +H    R+  P+K+P P+
Sbjct: 645 DEAASDVHQTHMRIRPPKKIPTPY 668



 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 403 GQWCNSICRHSP 438
           G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 501 EQRADWLHLAKTRVNTPRKLPQPW 572
           ++ A  +H    R+  P+K+P P+
Sbjct: 645 DEAASDVHQTHMRIRPPKKIPTPY 668



 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 403 GQWCNSICRHSP 438
           G W N I RHSP
Sbjct: 266 GWWENYISRHSP 277


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,511
Number of Sequences: 336
Number of extensions: 3453
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)