Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3k03
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...    87   1e-18
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    26   5.1  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    25   6.7  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   6.7  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   8.8  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score = 87.4 bits (207), Expect = 1e-18
 Identities = 39/67 (58%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
 Frame = +3

Query: 51  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQT-AG 227
           MKF++ VTSSRRK RK HF APS +RRVLMS+PLSKELR+++ ++S+P+R+DD++    G
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG 60

Query: 228 VPLSREG 248
               REG
Sbjct: 61  SNKGREG 67



 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 38/66 (57%), Positives = 51/66 (77%)
 Frame = +2

Query: 305 VVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRK 484
           V+RG  KG++ GK+  VYRKKF++ IER+ REKANGA+A VGI  SK VI KL ++KDRK
Sbjct: 57  VIRGSNKGRE-GKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRK 115

Query: 485 AILDRR 502
            ++ R+
Sbjct: 116 DLIVRK 121


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 306 LYVDTTKANRLAK*CRCIVKSLLYTLRGF 392
           LY D  +    A+ C C+V++LLY  R F
Sbjct: 78  LYHDNHERKMSAQSCACMVRTLLYGKRFF 106


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 425 VGIHPSKCV-IVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 547
           +GI P K    +K  + KDR A ++RR +G    +G D+  Y
Sbjct: 256 IGIDPEKFSDALKSDVVKDRIASIERRLQGVKVIVGVDRLDY 297


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +3

Query: 42  SDRMKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQT 221
           S ++  N+      R + K H    S I    + S +  EL Q+   +S+P+   D +Q 
Sbjct: 72  SSKINNNQTEFEQLRDSYKSHGDLNSAINDSRIQSIIF-ELNQQCEKESIPVSNIDWLQW 130

Query: 222 AGVPL 236
           A VPL
Sbjct: 131 ASVPL 135


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 547 VFTLVFAKCSQSALCSAIEDCFAVFIH 467
           +F LV    S   +C  IED F   IH
Sbjct: 588 LFNLVATNASDPYICGIIEDTFEDIIH 614


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,350
Number of Sequences: 5004
Number of extensions: 56352
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)