Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3k03
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0263 + 2136858-2137331                                          109   2e-24
12_01_0323 - 2459854-2460306                                          108   4e-24
11_01_0317 - 2365493-2365786,2365825-2365953                          108   4e-24
12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165...    28   6.9  
05_03_0647 + 16551583-16552275,16554434-16555207                       27   9.1  

>01_01_0263 + 2136858-2137331
          Length = 157

 Score =  109 bits (261), Expect = 2e-24
 Identities = 52/81 (64%), Positives = 68/81 (83%)
 Frame = +2

Query: 305 VVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRK 484
           VVRG YKG++ GKV+QVYR+++V+++ERI REK NG+T  VGIHPSK V+ KLK++KDRK
Sbjct: 57  VVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRK 115

Query: 485 AILDRRAKGRLAALGKDKGKY 547
           AILDR+A+GR  A  K KGK+
Sbjct: 116 AILDRKARGR--AADKAKGKF 134



 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 45/67 (67%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
 Frame = +3

Query: 51  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQTA-G 227
           MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQ   G
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60

Query: 228 VPLSREG 248
               REG
Sbjct: 61  SYKGREG 67


>12_01_0323 - 2459854-2460306
          Length = 150

 Score =  108 bits (259), Expect = 4e-24
 Identities = 52/81 (64%), Positives = 67/81 (82%)
 Frame = +2

Query: 305 VVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRK 484
           VVRG YKG++ GKV+QVYR+++V+++ERI REK NG+T  VGIHPSK V+ KLK++KDRK
Sbjct: 57  VVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRK 115

Query: 485 AILDRRAKGRLAALGKDKGKY 547
           AILDR+A GR  A  K KGK+
Sbjct: 116 AILDRKASGR--AADKAKGKF 134



 Score = 87.4 bits (207), Expect = 8e-18
 Identities = 45/67 (67%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
 Frame = +3

Query: 51  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQTA-G 227
           MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQ   G
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60

Query: 228 VPLSREG 248
               REG
Sbjct: 61  SYKGREG 67


>11_01_0317 - 2365493-2365786,2365825-2365953
          Length = 140

 Score =  108 bits (259), Expect = 4e-24
 Identities = 52/81 (64%), Positives = 67/81 (82%)
 Frame = +2

Query: 305 VVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRK 484
           VVRG YKG++ GKV+QVYR+++V+++ERI REK NG+T  VGIHPSK V+ KLK++KDRK
Sbjct: 44  VVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRK 102

Query: 485 AILDRRAKGRLAALGKDKGKY 547
           AILDR+A GR  A  K KGK+
Sbjct: 103 AILDRKASGR--AADKAKGKF 121



 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 31/44 (70%), Positives = 36/44 (81%)
 Frame = +3

Query: 51  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNV 182
           MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNV 44


>12_02_0996 -
           25115643-25115708,25115869-25116107,25116484-25116577,
           25116726-25116864,25116960-25117081,25117261-25117491,
           25117583-25117644,25118335-25118461,25118890-25119183,
           25119266-25119622
          Length = 576

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/65 (24%), Positives = 27/65 (41%)
 Frame = +1

Query: 376 IH*EDSKRKGQWCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRG 555
           +H   S+ +G      C H+  K C C +  E + Q+  R  +  Q     ++   I R 
Sbjct: 463 LHENLSQVEGHDIALCCNHNYMKQCKCSIAQEPQLQARARQNAASQQSQLHEKGRQIDRS 522

Query: 556 NCHSH 570
             HS+
Sbjct: 523 AVHSN 527


>05_03_0647 + 16551583-16552275,16554434-16555207
          Length = 488

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 233 AVARRMS*RFSSTSPGRRQHACPMVVRGHYKG 328
           A  RR+     STS GRR+ +   ++RG+ KG
Sbjct: 379 AAVRRLLAGVESTSAGRRKKSLSWLLRGYVKG 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,027,030
Number of Sequences: 37544
Number of extensions: 383315
Number of successful extensions: 1017
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)