Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3k03
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical pr...    99   1e-21
Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical p...    70   2e-12
Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical pr...    70   2e-12
Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical pr...    31   0.50 
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    29   2.7  
Z81077-12|CAH19097.1|  316|Caenorhabditis elegans Hypothetical p...    29   3.5  
AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormo...    28   4.7  
Z81075-7|CAI79229.1|  342|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z81075-3|CAI79228.1|  192|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z81075-2|CAB03048.1|  368|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL032645-3|CAI79264.1|  342|Caenorhabditis elegans Hypothetical ...    28   6.2  
AL031637-1|CAA21047.2|  317|Caenorhabditis elegans Hypothetical ...    28   6.2  

>Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical
           protein F28C6.7a protein.
          Length = 142

 Score =   99 bits (238), Expect = 1e-21
 Identities = 44/82 (53%), Positives = 65/82 (79%)
 Frame = +2

Query: 302 MVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDR 481
           +V+RG +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK  I KLK++KDR
Sbjct: 56  VVMRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKVAITKLKLDKDR 114

Query: 482 KAILDRRAKGRLAALGKDKGKY 547
           +A+++R+A GR    G  KGK+
Sbjct: 115 RALVERKAAGRSRVTGILKGKH 136



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 32/55 (58%), Positives = 42/55 (76%)
 Frame = +3

Query: 51  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEV 215
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEV 55


>Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical
           protein F28C6.7c protein.
          Length = 109

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 32/55 (58%), Positives = 42/55 (76%)
 Frame = +3

Query: 51  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEV 215
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEV 55



 Score = 67.3 bits (157), Expect = 8e-12
 Identities = 28/48 (58%), Positives = 41/48 (85%)
 Frame = +2

Query: 302 MVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSK 445
           +V+RG +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK
Sbjct: 56  VVMRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical
           protein F28C6.7b protein.
          Length = 106

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 32/55 (58%), Positives = 42/55 (76%)
 Frame = +3

Query: 51  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEV 215
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEV 55



 Score = 67.3 bits (157), Expect = 8e-12
 Identities = 28/48 (58%), Positives = 41/48 (85%)
 Frame = +2

Query: 302 MVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSK 445
           +V+RG +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK
Sbjct: 56  VVMRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical
           protein F49A5.4 protein.
          Length = 308

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 12/71 (16%)
 Frame = +1

Query: 277 WAQTACLSHG---CTWTLQRPT---------GWQSDAGVS*KVCCIH*EDSKRKGQWCNS 420
           WA   C  HG   CTW LQ  T         GW S+     K+C     +  + G+W ++
Sbjct: 113 WAGLICDRHGPAWCTWDLQSGTTAVYNNFADGWPSNED---KICNYFMTNGTQAGKWASA 169

Query: 421 ICRHSPFKVCD 453
            C  +   VC+
Sbjct: 170 SCTETMSFVCE 180


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 144  SPLSKELRQKF-NVKSMPIRKDDEVQTAGVPLSREG*VEGFLLQVLGADSMPVPWLYVDT 320
            S  S  L +KF   K+ PIR DD +  AG   S E  ++   +Q  GA  +P+   Y + 
Sbjct: 2163 SQYSSCLSKKFLTSKAQPIRSDDVISVAGT-RSTETTMKCLAVQFTGAAYLPIDASYPEE 2221

Query: 321  TK 326
             K
Sbjct: 2222 RK 2223


>Z81077-12|CAH19097.1|  316|Caenorhabditis elegans Hypothetical
           protein F36A2.14 protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = +3

Query: 39  KSDRMKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQ 218
           K +RMK +K  + S RKN K+  +A    +    ++  ++E ++  + K     K +E  
Sbjct: 88  KKERMKKSKDESGSSRKNSKK--TAEDMDQSSDDTTKPAEETKKTVSSKKQKKVKSEECD 145

Query: 219 TAGVPLS 239
             GVPLS
Sbjct: 146 HLGVPLS 152


>AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 119 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 617 FKNFIYLKNYLFKRPPWLWQFPRCI 543
           F NF++LKN+L  +     +F +CI
Sbjct: 79  FSNFLFLKNFLIPKTSRFCRFKKCI 103


>Z81075-7|CAI79229.1|  342|Caenorhabditis elegans Hypothetical
           protein F35C12.3c protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 407 WPFLFESSQCIQQTFYDTPASLC 339
           W  +F  ++CI  TF + P SLC
Sbjct: 217 WRCMFAQNKCIGTTFQNIPISLC 239


>Z81075-3|CAI79228.1|  192|Caenorhabditis elegans Hypothetical
           protein F35C12.3b protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 407 WPFLFESSQCIQQTFYDTPASLC 339
           W  +F  ++CI  TF + P SLC
Sbjct: 67  WRCMFAQNKCIGTTFQNIPISLC 89


>Z81075-2|CAB03048.1|  368|Caenorhabditis elegans Hypothetical
           protein F35C12.3a protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 407 WPFLFESSQCIQQTFYDTPASLC 339
           W  +F  ++CI  TF + P SLC
Sbjct: 243 WRCMFAQNKCIGTTFQNIPISLC 265


>AL032645-3|CAI79264.1|  342|Caenorhabditis elegans Hypothetical
           protein F35C12.3c protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 407 WPFLFESSQCIQQTFYDTPASLC 339
           W  +F  ++CI  TF + P SLC
Sbjct: 217 WRCMFAQNKCIGTTFQNIPISLC 239


>AL031637-1|CAA21047.2|  317|Caenorhabditis elegans Hypothetical
           protein Y47H9B.2 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 581 KRPPWLWQFPRCIYPCLCQVQPVC 510
           ++ PW ++    +YP LC++  +C
Sbjct: 249 RKYPWYYKMSSAMYPALCELAGIC 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,670,724
Number of Sequences: 27780
Number of extensions: 337226
Number of successful extensions: 925
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)