Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3j22
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 42 9e-05
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 33 0.040
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.49
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 29 0.85
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 29 0.85
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.5
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 28 1.5
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 27 2.0
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 3.4
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 27 3.4
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 27 3.4
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 4.5
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 4.5
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 26 6.0
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 41.9 bits (94), Expect = 9e-05
Identities = 36/143 (25%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Frame = +1
Query: 253 DKIRINSRFDQKENYAPSDSEDGYSENEKRLLDKVR-KRKHESD-SEEEMYAFXXXXXXX 426
+K +IN+ + E+ A S+ E Y+ +K L D ++ E + S+EE+ A
Sbjct: 24 EKEKINA-INTYEDVANSEDEF-YNAQDKILFDADNGEQADELELSDEELVALESSSDEE 81
Query: 427 XQKDDLGIADSD-VEGQEK---SDDDLPDSKAWGKNKQSYY-ATDYVDKDYGGFGDDXXX 591
+ +++++ + G++K ++++L D+K WG++ +SYY DY ++DY DD
Sbjct: 82 DGNAEENLSENEELSGKKKDAVNEEELYDNKGWGRSAKSYYGGDDYDNEDYSE-EDDEFD 140
Query: 592 XXXXXXXXKNIQKRLLEQLGDED 660
+Q++ LE++ + D
Sbjct: 141 ARMEEQEALRLQRKRLEKVSETD 163
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 33.1 bits (72), Expect = 0.040
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 256 KIRINSRFDQKENYAPSDSEDGYSENEKRL--LDKVRKRKHESDSEEE 393
K+R + D+ N+ P E+ + EKRL LD RK E +S+EE
Sbjct: 52 KLRKAGKIDKDGNWTPEALEEAKKKEEKRLKRLDAKYGRKEEGESQEE 99
>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 29.5 bits (63), Expect = 0.49
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 290 RIMPLQIQKMVILKMKSDYWIKYVRENMSLIVKRKCMLSLILTRNQIKRM 439
RI+ Q K + + D++ KYV EN+++I + L L L IK +
Sbjct: 200 RILFYQYSKASTMSLTDDFYNKYVLENLNIINNLQIFLHLDLEPLHIKSL 249
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 28.7 bits (61), Expect = 0.85
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +1
Query: 247 MADKIRINSRFDQKENYAPSDSEDGYSE--NEKRLLDKVRKRKHESDSEEEMYAFXXXXX 420
M ++++ + ++++P ++ S +E + + K+K S +E E F
Sbjct: 19 MNKRVKVAKLPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKKKDSSLNESEDEDFAGFGE 78
Query: 421 XXXQKDDLGIADSDVEGQEKSDDDLPDSK 507
+ D+L A+S+ E E+S +SK
Sbjct: 79 SASENDELESAESEAENDEESSSQKSNSK 107
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 28.7 bits (61), Expect = 0.85
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 241 DVMADKIRINSRFDQKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEM 396
++ D+I S ++ N SD+E+ + +K L D K K E SEEE+
Sbjct: 696 EIDTDEIEEQSDWEMISNQDASDNEELERKLDKVLEDADAKVKDEESSEEEL 747
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Frame = -2
Query: 535 SMIVYFCPKLLNQVSHHLIFPVLQHHCLLFPNHP------FDLIPRQNQRKHTFPLHYQT 374
S+ V+ L+N S+ +F H C LF HP + P++ +FPL Q
Sbjct: 37 SLAVFPSIPLINTHSNLCLFSNFSHSCFLFCTHPDTLPTSLSINPKKLSLSFSFPLS-QK 95
Query: 373 HVFSYVLYP 347
F L+P
Sbjct: 96 RPFPNFLHP 104
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 244 VMADKIR-INSRFDQKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEE 390
++A+++ + S F + +Y D +D Y+E +L++ VRK+ E + E
Sbjct: 540 ILANQLMTLKSSFSEVMSYELKD-DDNYNEELDKLVEDVRKKLQEKEEAE 588
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/78 (20%), Positives = 35/78 (44%)
Frame = +1
Query: 349 DKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADSDVEGQEKSDDDLPDSKAWGKNKQ 528
DKVR + DSE+ A D+ ++D++ + + +S+D S++ +K
Sbjct: 1286 DKVRAHVLDVDSEKRRIALGLKSSYFDSDSDISMSDNEEDVEMRSEDQSDTSESEVGSKD 1345
Query: 529 SYYATDYVDKDYGGFGDD 582
+ + + + G D+
Sbjct: 1346 DVQSEEVENLESAGDEDE 1363
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +1
Query: 223 LKLYDIDVMADKIRINSRFDQKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSE 387
++ + +DV ++K RI K +Y SDS+ S+NE+ + + + S+SE
Sbjct: 1288 VRAHVLDVDSEKRRI--ALGLKSSYFDSDSDISMSDNEEDVEMRSEDQSDTSESE 1340
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 271 SRFDQKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEE 393
SRF K + SD+E S E RL K++ +S SEEE
Sbjct: 2 SRFF-KGGSSDSDAESVDSSEENRLTSSRLKKQDDSSSEEE 41
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 304 SDSEDGYSENEKRLLDKVRKRKHESDSEEEM 396
SDS+D + K +++RK ES+S+E +
Sbjct: 119 SDSDDSVDSSNKNSEVSIKRRKTESNSQESV 149
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = +1
Query: 235 DIDVMADKIRINSRFDQKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXX 414
D D +K+ + + D+ E YA E+G + ++ K K + E + F
Sbjct: 180 DFDEEFEKLVASGKADESEFYAQPFVEEGEKDYDEAAAAKAGKSEWEIE-------FEKF 232
Query: 415 XXXXXQKDDLGIADSDVEGQEKSD--DDLPDSKAWGKNK 525
++ D+ +D D + +S+ D++P+ + K+K
Sbjct: 233 KLEQKKQPDVASSDGDFSDEPESEERDEVPELVSSSKSK 271
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 328 ENEKRLLDKVRKRKHESDSEEE 393
E EKR+L++ RKR+ + D EEE
Sbjct: 696 EEEKRILEE-RKRREKLDKEEE 716
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 356 YVRENMSLIVKRKCMLSLILTRNQIKR 436
YV+EN+ + K + LI TRN +KR
Sbjct: 1015 YVKENVRKSLLAKMLEELIETRNMVKR 1041
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +1
Query: 268 NSRFDQKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDL- 444
N +D+ Y E+ + + L+D +++ +H+++++EE+ + +K L
Sbjct: 276 NEHYDRAMQYLKQLVENILNRSLDNLIDTLKQVQHDAENDEELKDWLESTRQFVRKVLLK 335
Query: 445 -GIADSDVEGQE 477
G A SD +E
Sbjct: 336 KGYAKSDASDKE 347
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,764
Number of Sequences: 5004
Number of extensions: 42068
Number of successful extensions: 171
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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