Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3j22
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 33 0.29
11_06_0710 - 26492093-26493460 31 1.2
03_02_0715 + 10621789-10623243,10624074-10625018 30 1.5
02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72... 30 1.5
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 30 2.0
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 30 2.0
01_01_0033 + 260562-260661,260895-260941,261582-261681,261925-26... 29 3.6
05_05_0199 - 23165776-23166259,23166356-23167128,23167633-231678... 28 6.2
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446... 28 6.2
01_06_0256 - 27923497-27923855,27923944-27924016,27924116-27924121 28 6.2
12_01_0223 + 1708420-1708512,1708790-1709008,1709117-1709330,170... 28 8.3
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 32.7 bits (71), Expect = 0.29
Identities = 19/78 (24%), Positives = 33/78 (42%)
Frame = +1
Query: 298 APSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADSDVEGQE 477
A E+G SE+E +D K + EEE A + D++ E +
Sbjct: 60 AEDAKEEGASESEGEAMDVEAKESADEKEEEEAEAEADGDEGEDKSDEMDAEAGAAEEEA 119
Query: 478 KSDDDLPDSKAWGKNKQS 531
K +++L D++ G+ S
Sbjct: 120 KEEEELKDAEVEGEGAGS 137
>11_06_0710 - 26492093-26493460
Length = 455
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = +1
Query: 310 SEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADSDVEGQEKSDD 489
++DG E+EK+ K +K K +S +++ A DD + + K+ D
Sbjct: 126 TDDGEDESEKKKKKKKKKSKSKSSDDDDDDAEKKSKKKSKNSDDDEDDKKKSKKKPKNPD 185
Query: 490 DLPDSKAWGKNKQS 531
D D K K K S
Sbjct: 186 DDEDDKKKSKKKSS 199
>03_02_0715 + 10621789-10623243,10624074-10625018
Length = 799
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +1
Query: 358 RKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADSDVEGQEKSDDDLPDSKAWGK 519
R+RK+E D + Y+ +DL + D+E +E+ DD+ P SK K
Sbjct: 102 RRRKYEDDDD---YSEEEDDRVDEYGEDLEEEEEDLEEEEEEDDEAPRSKRMKK 152
>02_01_0099 +
726576-727105,727899-728048,728510-728635,728726-729714,
729776-729818,730101-730218,730743-730853
Length = 688
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 484 LIFPVLQHHCLLFPNHPFDLIPRQNQRKHTFPL 386
L++P+ H L P+HP IP R H PL
Sbjct: 7 LLYPLPSHLLPLLPSHPLVRIPSSTSRAHLPPL 39
>12_02_1035 -
25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +1
Query: 235 DIDVMADKIRINSRFDQKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXX 414
++ ++ + +R+ ++ NY+ + LL++ R+R+++ EE
Sbjct: 623 EVIMLQEMLRLEREAHKELNYSGKTQFSAVQKQLSFLLEEGRRRENQLQDEEHKIVEAQM 682
Query: 415 XXXXXQK--DDLGIADSDVEGQEKSDDDL 495
QK D+ A+SDV GQ + +L
Sbjct: 683 EIFVLQKCLGDMAEANSDVSGQLQKQKEL 711
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Frame = +1
Query: 241 DVMADKIRINSRFDQKENYAPSDSE-----DGYSENEKRLLDKVRKRKH-ESDSEE 390
D A + ++ SR ++ ++ SDSE DG ++ KR D+ R RKH SDS+E
Sbjct: 1107 DAEAKEKKLKSRKHRRRGHSSSDSESDSDSDGDRKHRKRK-DRKRHRKHGHSDSDE 1161
>01_01_0033 +
260562-260661,260895-260941,261582-261681,261925-262181,
262525-262640,263014-263098,264236-264415,264740-264817,
264909-264970,265138-265246,266237-266514,266591-266657,
266734-266802,266880-266981,267309-267443
Length = 594
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 448 IADSDVEGQEKSDDDLPDSKAWGKNKQSYY 537
IA D + ++ +DD D +WG+ K +YY
Sbjct: 93 IAGGD-DSMDEHEDDHKDKNSWGRGKNAYY 121
>05_05_0199 -
23165776-23166259,23166356-23167128,23167633-23167869,
23167973-23168197
Length = 572
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 457 SDVEGQEKSDDDLPDSKAWGKN 522
S V G E DDD PDSK W ++
Sbjct: 338 SSVGGGEDLDDDEPDSKRWRRD 359
>03_03_0186 + 15243150-15243563,15243685-15243777,15244604-15244666,
15245028-15245114,15245197-15245349,15245422-15245579,
15246458-15246692,15246782-15246892,15246942-15246968,
15247269-15248327,15248432-15248692,15249011-15249196,
15249642-15250793,15250886-15251236,15251343-15251738
Length = 1581
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/70 (21%), Positives = 29/70 (41%)
Frame = +1
Query: 349 DKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADSDVEGQEKSDDDLPDSKAWGKNKQ 528
D V + K E D+ + M + +D+ + + V+G + + + + KNK
Sbjct: 1498 DAVMRNKMEEDTIDTMQEENKMDGKNPEANDMAMEEKTVDGDDDPKNKMEEGNTEAKNKM 1557
Query: 529 SYYATDYVDK 558
T+ DK
Sbjct: 1558 EEGNTEAKDK 1567
>01_06_0256 - 27923497-27923855,27923944-27924016,27924116-27924121
Length = 145
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +1
Query: 235 DIDVMADKIRINSRFDQK-ENY---APSDSEDGYSENEKRLLDKVRKRKHESDSEEE 393
D+ V+ DK+R + +K E Y + S++ EK+ D+ K+K E + EEE
Sbjct: 47 DVVVIVDKLRHPKKGKEKREGYMVEVMAVSDEKKEAEEKKKKDEEEKKKKEKEKEEE 103
>12_01_0223 +
1708420-1708512,1708790-1709008,1709117-1709330,
1709901-1710001
Length = 208
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 448 IADSDVEGQEKSDDDLPDSKAW 513
+AD DVE QE DDD D W
Sbjct: 184 LADLDVETQESIDDDDDDDLVW 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,877,871
Number of Sequences: 37544
Number of extensions: 224315
Number of successful extensions: 839
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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