Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3j22
(701 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66499-7|CAA91298.2| 407|Caenorhabditis elegans Hypothetical pr... 44 8e-05
U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical p... 34 0.11
Z81048-4|CAB02844.1| 219|Caenorhabditis elegans Hypothetical pr... 33 0.26
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 32 0.46
AL031632-2|CAA21005.2| 789|Caenorhabditis elegans Hypothetical ... 31 0.80
U53154-10|AAC25849.1| 142|Caenorhabditis elegans Hypothetical p... 31 1.1
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 30 1.8
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 30 1.8
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 29 3.2
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical... 29 3.2
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 29 3.2
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 29 3.2
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 29 4.3
U80847-1|AAB37983.2| 738|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z93389-5|CAI79177.1| 212|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z77659-5|CAB01168.1| 953|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z70750-10|CAA94746.1| 439|Caenorhabditis elegans Hypothetical p... 28 5.6
Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z92777-9|CAJ58495.1| 396|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z81568-2|CAB04590.1| 276|Caenorhabditis elegans Hypothetical pr... 28 7.4
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr... 28 7.4
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 28 7.4
Z70034-10|CAI79119.2| 560|Caenorhabditis elegans Hypothetical p... 27 9.8
Z70034-3|CAA93860.2| 620|Caenorhabditis elegans Hypothetical pr... 27 9.8
U88309-2|AAB42334.1| 211|Caenorhabditis elegans Hypothetical pr... 27 9.8
U41266-1|AAM48565.1| 521|Caenorhabditis elegans Zinc metallopro... 27 9.8
U12964-10|AAK93849.2| 140|Caenorhabditis elegans Hypothetical p... 27 9.8
AC024838-6|AAF60823.1| 214|Caenorhabditis elegans Hypothetical ... 27 9.8
AB007817-1|BAA28353.1| 521|Caenorhabditis elegans matrix metall... 27 9.8
>Z66499-7|CAA91298.2| 407|Caenorhabditis elegans Hypothetical
protein T01B7.5a protein.
Length = 407
Score = 44.4 bits (100), Expect = 8e-05
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Frame = +1
Query: 322 YSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIA-----DSDVEGQEKSD 486
Y + L+D++ H D + E A ++ L + S+ +G + D
Sbjct: 14 YEDENDDLIDEINTF-HNKDRKVEKGAIHKRKTFNRPEEVLNVEAEASDSSEDDGSDFDD 72
Query: 487 DDLPD--SKAWGKNKQSYYATDYVDKDYGGFGDD 582
DD+ D WGK ++ +Y T +VDKD+GG ++
Sbjct: 73 DDVNDITDNKWGKKRKDFYGTGFVDKDWGGMREE 106
>U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical
protein C33G8.2 protein.
Length = 390
Score = 33.9 bits (74), Expect = 0.11
Identities = 25/93 (26%), Positives = 38/93 (40%)
Frame = +1
Query: 283 QKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADSD 462
Q + + ED E E++ K K+K E D EEE + DD D
Sbjct: 124 QMRDKKKQEEEDKKKEEEEKDKKKKDKKKEEDDEEEEQ---KDKKKKDEKNDDDDEEDKK 180
Query: 463 VEGQEKSDDDLPDSKAWGKNKQSYYATDYVDKD 561
+ ++K DD+ + K K K+ D D+D
Sbjct: 181 KDKKKKKDDNDEEEKEKDKKKKDKKKDDDDDED 213
Score = 33.9 bits (74), Expect = 0.11
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Frame = +1
Query: 280 DQKENYAPSDSEDGYSENEKRLLDKVRKR--KHESDSEEEMYAFXXXXXXXXQKDDLGIA 453
D+K+ D +D EN+K+ DK +K+ K + ++E++ +KDD
Sbjct: 198 DKKKKDKKKDDDDDEDENDKK-KDKKKKKDDKDDDENEDDKKKDKKKKKDDKEKDDDDEE 256
Query: 454 DSD--VEGQEKSDDDLPDSKAWGKNKQ 528
+ D + ++K+DDD D K K K+
Sbjct: 257 EKDKKKKDKKKNDDDEEDKKKDKKKKK 283
Score = 29.5 bits (63), Expect = 2.4
Identities = 23/83 (27%), Positives = 38/83 (45%)
Frame = +1
Query: 280 DQKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADS 459
D+K+ D +D E EK+ DK +K + D +E+ +KDD+ D
Sbjct: 315 DKKKKDKKKDDDDDDDEKEKK--DKKKKDDKDDDEDED------KDDKKKKKDDVD-DDM 365
Query: 460 DVEGQEKSDDDLPDSKAWGKNKQ 528
+ ++K DDD D K+K+
Sbjct: 366 KKDKKKKEDDDKEDEDDKKKDKK 388
Score = 28.7 bits (61), Expect = 4.3
Identities = 24/93 (25%), Positives = 39/93 (41%)
Frame = +1
Query: 283 QKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADSD 462
+K+ D +D E+ K+ DK +K+ + D +EE +KDD D
Sbjct: 276 KKDKKKKKDDDDDEDEDNKKK-DKKKKKDDKDDEDEEKE--KDKKKKDKKKDDDDDDDEK 332
Query: 463 VEGQEKSDDDLPDSKAWGKNKQSYYATDYVDKD 561
+ +K DD D + K+ + D VD D
Sbjct: 333 EKKDKKKKDDKDDDEDEDKDDKKKKKDD-VDDD 364
>Z81048-4|CAB02844.1| 219|Caenorhabditis elegans Hypothetical
protein C41G7.6 protein.
Length = 219
Score = 32.7 bits (71), Expect = 0.26
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +1
Query: 280 DQKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADS 459
D+K+ + +DG ++EK+ K K+ + D ++E +KDD D
Sbjct: 93 DKKDEKKDEEKKDGEKKSEKKDEKKDDKKDDKKDGKKEDEKKDDEKKDEEKKDDKKEDDK 152
Query: 460 DVEGQ-EKSDDDLPDSKAWGKNK 525
+ + EK DD+ D K K+K
Sbjct: 153 KGDKKDEKKDDEKKDDKKEAKSK 175
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/71 (25%), Positives = 29/71 (40%)
Frame = +1
Query: 280 DQKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADS 459
D+KE+ D +D ++EK+ K K K + + + K D D
Sbjct: 146 DKKEDDKKGDKKDEKKDDEKKDDKKEAKSKSKKSKKSKKSKKSKREKKDEDKKDDDKKDD 205
Query: 460 DVEGQEKSDDD 492
D + EK DD+
Sbjct: 206 DKKDDEKKDDE 216
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 31.9 bits (69), Expect = 0.46
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Frame = +1
Query: 235 DIDVMADKIRINSRFDQKENYAPSDSEDGYSE--NEKRLLDKVRKRKHESDSEE-----E 393
+ID D+ + + E D E+ +E N++ L D + + DSEE E
Sbjct: 3813 EIDEAEDEDDGDETDKEDEEAIEGDGEEDQNEDQNDQELEDPTQTNEENEDSEEQKKEDE 3872
Query: 394 MYAFXXXXXXXXQKDDLGIADSDV-EGQEKSDDDLPDSKAWGKNK 525
Q D+ +AD + E +EK D + D K GK+K
Sbjct: 3873 ALEQGTGGEKNDQDDNKDVADGGLAEEEEKEDQEDQDEKGEGKSK 3917
>AL031632-2|CAA21005.2| 789|Caenorhabditis elegans Hypothetical
protein Y32B12B.2 protein.
Length = 789
Score = 31.1 bits (67), Expect = 0.80
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Frame = +1
Query: 280 DQKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADS 459
D++E+Y D+ + E+E+ LD + + K E +S+ + DD +
Sbjct: 627 DEEEDY---DNTEIVYESEEDELDGL-EAKLERESDRRHKKWEKKNKVMIDSDDEEEEEE 682
Query: 460 DVEGQEKSDDDLPDSKAWGKNKQSYYATDYV-DKDYGGFGDD 582
+ + +E DDD D W K +S D + D+ +G F D+
Sbjct: 683 NDDDKENQDDDTHDIVDWDKLDESDEDEDELKDRKHGLFDDE 724
>U53154-10|AAC25849.1| 142|Caenorhabditis elegans Hypothetical
protein C33G8.3 protein.
Length = 142
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 238 IDVMADKIRINSRFDQKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEE 393
++ + DKI N +K+N + +D E E+ K + +K DSEEE
Sbjct: 61 VEKIKDKIEENKEKREKKNKKKGNKKDEDEEEEEDKDKKKKDKKKNKDSEEE 112
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 29.9 bits (64), Expect = 1.8
Identities = 25/89 (28%), Positives = 44/89 (49%)
Frame = +1
Query: 235 DIDVMADKIRINSRFDQKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXX 414
D D + R +S + K+ SDSED Y + EK+ K K+K + SE++
Sbjct: 66 DEDDYKPEKRKSSAKNGKKKDVGSDSEDDY-KPEKKKSKKNNKKKAQESSEDD------- 117
Query: 415 XXXXXQKDDLGIADSDVEGQEKSDDDLPD 501
++ + +++ DV+ Q SDD+L +
Sbjct: 118 ----DEESEGDVSEEDVKPQIHSDDELEE 142
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/83 (25%), Positives = 38/83 (45%)
Frame = +1
Query: 283 QKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADSD 462
++E+ AP+ ++ E +++ ++ +K K E +E ++DD DSD
Sbjct: 141 EEEDEAPTTDDE--EEQKRKEKERRKKEKREKKERKEKKRLEKENRKIKEEDD---EDSD 195
Query: 463 VEGQEKSDDDLPDSKAWGKNKQS 531
E EK+ SK K+K S
Sbjct: 196 DEDDEKAKKKKRKSKGAEKSKPS 218
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 29.9 bits (64), Expect = 1.8
Identities = 25/89 (28%), Positives = 44/89 (49%)
Frame = +1
Query: 235 DIDVMADKIRINSRFDQKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXX 414
D D + R +S + K+ SDSED Y + EK+ K K+K + SE++
Sbjct: 66 DEDDYKPEKRKSSAKNGKKKDVGSDSEDDY-KPEKKKSKKNNKKKAQESSEDD------- 117
Query: 415 XXXXXQKDDLGIADSDVEGQEKSDDDLPD 501
++ + +++ DV+ Q SDD+L +
Sbjct: 118 ----DEESEGDVSEEDVKPQIHSDDELEE 142
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/83 (25%), Positives = 38/83 (45%)
Frame = +1
Query: 283 QKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADSD 462
++E+ AP+ ++ E +++ ++ +K K E +E ++DD DSD
Sbjct: 141 EEEDEAPTTDDE--EEQKRKEKERRKKEKREKKKRKEKKRLEKENRKIKEEDD---EDSD 195
Query: 463 VEGQEKSDDDLPDSKAWGKNKQS 531
E EK+ SK K+K S
Sbjct: 196 DEDDEKAKKKKRKSKGAEKSKPS 218
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 29.1 bits (62), Expect = 3.2
Identities = 24/94 (25%), Positives = 37/94 (39%)
Frame = +1
Query: 241 DVMADKIRINSRFDQKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXX 420
DV A I S D+ +P++S E R + +++ + E+ F
Sbjct: 101 DVAAILTSIQSLLDEPNPNSPANSLAAQLYQENR---REYEKRVQQIVEQSWLNFGENEG 157
Query: 421 XXXQKDDLGIADSDVEGQEKSDDDLPDSKAWGKN 522
KDD+ I + G +DDD D A G N
Sbjct: 158 DAVLKDDVEIEEIAAPGANDADDDRMDEGASGSN 191
>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
protein Y57A10A.18b protein.
Length = 1459
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +1
Query: 433 KDDLGIADSDVEGQEKSD-DDLPDSKAWGKNKQSYYATD---YVDKDYGGFGDD 582
K DL + ++E E+++ +D PD KA G +++ D Y + DYG D+
Sbjct: 472 KKDLLRSKEELEADEQTESEDSPDEKALGSDEEEEIEFDDEEYNEGDYGSQADE 525
>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18a protein.
Length = 1456
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +1
Query: 433 KDDLGIADSDVEGQEKSD-DDLPDSKAWGKNKQSYYATD---YVDKDYGGFGDD 582
K DL + ++E E+++ +D PD KA G +++ D Y + DYG D+
Sbjct: 472 KKDLLRSKEELEADEQTESEDSPDEKALGSDEEEEIEFDDEEYNEGDYGSQADE 525
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 29.1 bits (62), Expect = 3.2
Identities = 24/94 (25%), Positives = 37/94 (39%)
Frame = +1
Query: 241 DVMADKIRINSRFDQKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXX 420
DV A I S D+ +P++S E R + +++ + E+ F
Sbjct: 101 DVAAILTSIQSLLDEPNPNSPANSLAAQLYQENR---REYEKRVQQIVEQSWLNFGENEG 157
Query: 421 XXXQKDDLGIADSDVEGQEKSDDDLPDSKAWGKN 522
KDD+ I + G +DDD D A G N
Sbjct: 158 DAVLKDDVEIEEIAAPGANDADDDRMDEGASGSN 191
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 307 DSEDGYSENEKRLLDKVRKRKHESDSEEE 393
D D Y+++EKR L++ R R ++S+ EE
Sbjct: 566 DFNDAYNDDEKRGLEEHRPRGYDSERAEE 594
>U80847-1|AAB37983.2| 738|Caenorhabditis elegans Hypothetical
protein C17H11.2 protein.
Length = 738
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/49 (24%), Positives = 28/49 (57%)
Frame = +1
Query: 241 DVMADKIRINSRFDQKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSE 387
+ +A I + +F +KEN + + +DG+ ++ LL +V +++ + E
Sbjct: 311 EALARAIYASGKFYEKENRSRAPEDDGFEAPDEDLLQEVTSQENTASPE 359
>Z93389-5|CAI79177.1| 212|Caenorhabditis elegans Hypothetical
protein T13F3.8 protein.
Length = 212
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +1
Query: 286 KENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADSDV 465
+EN ++ E EK+ +K ++ K E + +EE+ +KDD +
Sbjct: 79 EENKEAEKKDEPKKEEEKKEEEKKKEEKKEEEKKEEV-------KEEEKKDDSKRDEKKK 131
Query: 466 EGQEKSDDD 492
+G++K DD+
Sbjct: 132 DGEKKEDDE 140
>Z77659-5|CAB01168.1| 953|Caenorhabditis elegans Hypothetical protein
F23B12.7 protein.
Length = 953
Score = 28.3 bits (60), Expect = 5.6
Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 6/109 (5%)
Frame = +1
Query: 268 NSRFDQK-ENYAPSDSEDGYS-ENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXX---- 429
++ FDQ E + P + + + + K + KR + D EE+
Sbjct: 776 SAEFDQLLERFEPGELNEEFDIDYSKEFGAEKSKRNKKKDVEEDDVDMDEDDDIDLNDLN 835
Query: 430 QKDDLGIADSDVEGQEKSDDDLPDSKAWGKNKQSYYATDYVDKDYGGFG 576
+++D G+ D D + + DDD D A ++ D D + GGFG
Sbjct: 836 EEEDGGMEDDDEDDGDMDDDDEDDEDA--EDDDEVDDDDEDDDEDGGFG 882
>Z70750-10|CAA94746.1| 439|Caenorhabditis elegans Hypothetical
protein C50F4.12 protein.
Length = 439
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 407 LILTRNQIKRMIWE*QTVMLKDRKNQMMTYLIQKLGAKINNHTM 538
L T NQ+K ++ E + + D K TY + KINN T+
Sbjct: 306 LNFTTNQLKMLVMEDPRIFMMDSKLVSKTYKYVRDVMKINNETI 349
>Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical
protein M01E5.5b protein.
Length = 734
Score = 27.9 bits (59), Expect = 7.4
Identities = 26/97 (26%), Positives = 41/97 (42%)
Frame = +1
Query: 235 DIDVMADKIRINSRFDQKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXX 414
D D + R +S + K+ SDSED Y + EK+ K K+K + SE++
Sbjct: 66 DEDDYKPEKRKSSAKNGKKKDVGSDSEDDY-KPEKKKSKKNNKKKAQESSEDD----DEE 120
Query: 415 XXXXXQKDDLGIADSDVEGQEKSDDDLPDSKAWGKNK 525
++D+ +G EKS A GK +
Sbjct: 121 SEGDVSEEDVKPQKRKSKGAEKSKPSTSKKDAGGKKE 157
>Z92777-9|CAJ58495.1| 396|Caenorhabditis elegans Hypothetical
protein C17H1.14 protein.
Length = 396
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 253 DKIRINSRFDQKENYAPSDSEDGYSENEKRLLDKVRKRKHE 375
D+ R R DQ++ + + +E E+R D+ R+R+ E
Sbjct: 16 DRARAQIRADQEQRRRDLEESERRAEEERRQYDRERRREQE 56
>Z81568-2|CAB04590.1| 276|Caenorhabditis elegans Hypothetical
protein K08E3.2 protein.
Length = 276
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/77 (27%), Positives = 33/77 (42%)
Frame = +1
Query: 280 DQKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADS 459
D KE+ D E + EK +K + K+++ E + +KDD +
Sbjct: 95 DSKEDKKDEDHEKKKTAEEKENNEKKDENKNKNKDERK------DEKKDEKKDDEKDERN 148
Query: 460 DVEGQEKSDDDLPDSKA 510
D + +EK DD D KA
Sbjct: 149 DEKKEEKKDDQKDDKKA 165
>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical
protein T13H2.5a protein.
Length = 2471
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +1
Query: 226 KLYDIDVMADKIRINSRFDQKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEE 393
KLY+ D M D R +K+ S+D SE+E D+ R+ DSE E
Sbjct: 511 KLYNFDFMIDMNHQVDRKFEKDGEIHVISDDSNSEHES---DEAEDRESSIDSEHE 563
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 27.9 bits (59), Expect = 7.4
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Frame = +1
Query: 226 KLYD-IDVMADKIRINSRFDQKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYA 402
KL+D ++ KIR + R D K S ED + + + R++ +SD E
Sbjct: 415 KLFDYLNKKEIKIRNSHRIDNKSAGYGSSDEDDIDPYKSTVKAEGREQDDDSDDESTDED 474
Query: 403 FXXXXXXXXQKDDLGIADSDVEGQEKSDDDLPDS 504
+ QK+D DS EG DD DS
Sbjct: 475 YDLDKDMKKQKND---KDSS-EGSGSEPDDEYDS 504
>Z70034-10|CAI79119.2| 560|Caenorhabditis elegans Hypothetical
protein C18E9.3c protein.
Length = 560
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 286 KENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYAF 405
KEN +D ++ K L+DKV K K EE+ AF
Sbjct: 3 KENVVADSWDDADADPVKELMDKVEKVKLLQRKEEKKEAF 42
>Z70034-3|CAA93860.2| 620|Caenorhabditis elegans Hypothetical
protein C18E9.3b protein.
Length = 620
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 286 KENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYAF 405
KEN +D ++ K L+DKV K K EE+ AF
Sbjct: 63 KENVVADSWDDADADPVKELMDKVEKVKLLQRKEEKKEAF 102
>U88309-2|AAB42334.1| 211|Caenorhabditis elegans Hypothetical
protein T23B3.5 protein.
Length = 211
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = +1
Query: 298 APSDSEDGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADSDVEGQE 477
A + +DG ++EK+ D K++ E EE+ +K D D + E
Sbjct: 68 AEGEKKDGEKKSEKKDGD---KKEEEKKDEEKKDGDKKEDDKKDEKKDEDKKDEKKDADE 124
Query: 478 KSDDDLPDSK 507
K D++ D K
Sbjct: 125 KKDEEKKDDK 134
>U41266-1|AAM48565.1| 521|Caenorhabditis elegans Zinc
metalloprotease protein 1 protein.
Length = 521
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +1
Query: 253 DKIRINSRFDQKENYAPSDSEDGYSENE----KRLLDKVRKRKHESD 381
DK + S + K + ++ E+ +ENE K D+ R R+HESD
Sbjct: 248 DKYNMRSYYGAKASKKENEEEERKTENEDKRRKTEKDRGRTREHESD 294
>U12964-10|AAK93849.2| 140|Caenorhabditis elegans Hypothetical
protein F26F4.9a protein.
Length = 140
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +1
Query: 241 DVMADKIRINSRFDQKENYAPSDSEDGYSENEKRLLDKVRKRKHESDSEEEM 396
D ADK+R+ + Q+E+ E S+ E++L ++ KR+ E + +E++
Sbjct: 62 DREADKMRLARQKQQREHDEKEKIET--SKREEKLKEEAEKRQREYEEQEKV 111
>AC024838-6|AAF60823.1| 214|Caenorhabditis elegans Hypothetical
protein Y59E9AL.6 protein.
Length = 214
Score = 27.5 bits (58), Expect = 9.8
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = +1
Query: 298 APSDSE--DGYSENEKRLLDKVRKRKHESDSEEEMYAFXXXXXXXXQKDDLGIADSDVEG 471
AP+D E DG ++E + ++ + K E D ++E K D D D +
Sbjct: 65 APADGEKKDGDKKSEMKEGEEKKNEKKEGDEKDE-------------KKDEEKKDGDDKK 111
Query: 472 QEKSDDDLPDSKAWGKNKQSYYATDYVDKD 561
EK DDD D K +K+ D +KD
Sbjct: 112 DEKKDDDKKDEKK--SDKKDEKKDDKKEKD 139
>AB007817-1|BAA28353.1| 521|Caenorhabditis elegans matrix
metalloproteinase protein.
Length = 521
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +1
Query: 253 DKIRINSRFDQKENYAPSDSEDGYSENE----KRLLDKVRKRKHESD 381
DK + S + K + ++ E+ +ENE K D+ R R+HESD
Sbjct: 248 DKYNMRSYYGAKASKKENEEEERKTENEDKRRKTEKDRGRTREHESD 294
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,946,452
Number of Sequences: 27780
Number of extensions: 226575
Number of successful extensions: 1006
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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