Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3j20
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    27   1.9  
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    26   4.3  
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...    26   4.3  
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    26   4.3  

>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -3

Query: 445 PYTFKHHTFS*X-RFRNPKITFEFYIVVXDGHLLSFQY-SFLYK*CSF 308
           P++  +  FS    + +P    E+  +V  GHL +F+Y   L K CSF
Sbjct: 248 PFSLDYRPFSPLLAWSSPLANVEYLALVYPGHLFAFRYDKSLGKFCSF 295


>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 114 HXNLXFKITRKFILHNXLMNXLDQRLCVIKRLILNTAQISF 236
           H  L + I  +F +H         +LC +KR+ L    + F
Sbjct: 98  HFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPF 138


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 114 HXNLXFKITRKFILHNXLMNXLDQRLCVIKRLILNTAQISF 236
           H  L + I  +F +H         +LC +KR+ L    + F
Sbjct: 98  HFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPF 138


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 114 HXNLXFKITRKFILHNXLMNXLDQRLCVIKRLILNTAQISF 236
           H  L + I  +F +H         +LC +KR+ L    + F
Sbjct: 98  HFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPF 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,223,911
Number of Sequences: 5004
Number of extensions: 39402
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)