Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3j20
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0708 + 24477228-24477375,24477823-24477905,24478233-244783...    51   1e-06
01_06_0509 - 29921224-29924589                                         29   2.6  
06_03_1221 - 28514952-28518152                                         28   5.9  

>01_05_0708 +
           24477228-24477375,24477823-24477905,24478233-24478391,
           24478882-24478992,24479098-24479164,24479269-24479537
          Length = 278

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 32/89 (35%), Positives = 47/89 (52%)
 Frame = +2

Query: 203 KTNIKYSPDKLWXVACLIRGXTVXEALKXLXFXNKKGALFVKEAVLEAQEMAIXDXNVEF 382
           K +IK SP K+  VA L+RG  V +AL  L    K+ A  V + +  A+  A  +  ++ 
Sbjct: 125 KKDIKQSPKKVNLVAKLVRGMRVEDALLQLQVTVKRAAKTVYQVIHSARANAAHNHGLD- 183

Query: 383 KSNLWVAESXSGKGMVFKGIRRHARGRLG 469
              L V E+  GKG+  K +  HA+GR G
Sbjct: 184 PDKLIVEEAFVGKGLYLKRLSYHAKGRCG 212


>01_06_0509 - 29921224-29924589
          Length = 1121

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +2

Query: 467  GEVRYKYSHYFVRLEEGKPPTDYYKRKPLLPSNQLQDWLEQMRRRKITNSY 619
            G+V Y Y    + L  GKPPTD          N L  W++Q  + KIT+ +
Sbjct: 991  GDV-YSYGVVLLELLTGKPPTD---SADFGEDNNLVGWVKQHTKLKITDVF 1037


>06_03_1221 - 28514952-28518152
          Length = 1066

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = +2

Query: 515 GKPPTDYYKRKPL----LPSNQLQDWLEQMRRRKITN 613
           G+ P D +  KPL    LPSNQ++  L+  R  K+TN
Sbjct: 241 GELPGDIFDVKPLQRLQLPSNQIEGRLDPERIAKLTN 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,596,250
Number of Sequences: 37544
Number of extensions: 227240
Number of successful extensions: 477
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)